Transcription factor: SoxR
| Gene ID |
SCO1697 (link to ScoCyc) |
| Factor type |
MerR-family |
| Pfam |
None |
| Consensus seq. |
ND |
| Comment |
Using the E. coli SoxR binding sequence, we predicted ?ve candidate genes of the SoxR regulon and demonstrated that SoxR binds to their promoter regions and activates their
expression concurrently with the production of the blue antibiotic actinorhodin (a benzoisochromanequinone). |
| SCO2478 |
None |
Positive |
2670164..2670194 |
-83:-53(from translation start site) |
TTGACCTCAAGCAAACTTGAGGTACCAGGCT |
Dela Cruz R, et al. (2010): DB, GS, HM, PE, qRT-PCR
Shin JH, et al. (2011): HM, OV, S1, GS
|
| SCO4266 |
None |
Positive |
4682907..4682937 |
-71:-41(from translation start site) |
TTGACCTCAAGCAGGCTTGAGGTCGTTGAGT |
Dela Cruz R, et al. (2010): DB, GS, HM, PE, qRT-PCR
Shin JH, et al. (2011): HM, OV, S1, GS
|
| SCO7008 |
None |
Positive |
7782617..7782647 |
-44:-14(from translation start site) |
TTGACCTCAAGGTTGGTCGAGGTTCTACGGT |
Dela Cruz R, et al. (2010): DB, GS, HM, PE, qRT-PCR
Shin JH, et al. (2011): HM, OV, S1, GS
|
| SCO1909 |
None |
Positive |
2047000..2047030 |
-71:-41(from translation start site) |
TTGACCTCAACCTTGGTCGAGGTCGGAGGGT |
Dela Cruz R, et al. (2010): DB, GS, HM, PE, qRT-PCR
Shin JH, et al. (2011): HM, OV, S1, GS
|
| SCO1178 |
None |
Positive |
1242790..1242820 |
-71:-41(from translation start site) |
TTGACCTCAACCGTGGTCGAGGTACCACGGT |
Dela Cruz R, et al. (2010): DB, GS, HM, PE, qRT-PCR
Shin JH, et al. (2011): HM, OV, S1, GS
|
|