DBSCR - Regulated genes

   Database of transcriptional regulation in Streptomyces coelicolor
Home
 Transcription factors
 Regulated genes
 Revised TLS
 Search
 Contacts

Regulated gene: rrnA

Operon: No data
Genes Gene ID Synonyms Direction Genome position Function
rrnA rrnA
+ 4530650..4532177 16S rRNA

Promoters

Binding
factor		 Promoter
name		 Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
HrdB rrnA-P1 Promoter -50:+10 4530022..4530081 TTGACAGCGACGCTTGACAGCCCTCTGCGGGATCCGTAAGGTTCTTCGGGTTGCCACGGG Van Wezel GP,et al. (1994): PE,RO
Unknown_sigma rrnA-P2 Promoter -50:+10 4530202..4530261 CCCGATCGACCCCGATTGGGAATCGCCGAGAGGGTCCGCTAAGGTTTGAGACGTCGGAAC Van Wezel GP,et al. (1994): PE,RO
Unknown_sigma rrnA-P3 Promoter -50:+10 4530285..4530344 CCCTCCTGACGGGGAATCAGGGCCCGAAAGGATCTGATAGAGTCGGAACCGCCGGAAAGG Van Wezel GP,et al. (1994): PE,RO
Unknown_sigma rrnA-P4 Promoter -70:+20 4530345..4530434 GAAACGCGGAAGCGGGAACCTGGAAAGCACCGAGGAAATCGGATCGGAAAGATCTGATAGAGTCGGAAACGCAAGACCGAAGGGAAGCGC Van Wezel GP,et al. (1994): PE,RO

Comments:
Unknown_sigma P2 appears to be the most frequently used promoter.
Unknown_sigma P1 and P3 are used to similar extents, and are considerably weaker.
Unknown_sigma P4 is the weakest promoter.

Terminator

No Data

Overview

DBSCR:

Copyright: BASE, RIKEN
Contact: Yuko Makita