DBSCR - Transcription factor

   Database of transcriptional regulation in Streptomyces

Home
Transcription factors
Regulated genes
Revised TLS
Search
Contacts

Transcription factor: Unknown_sigma

GenBank ID no data
Factor type ND
Pfam None
Consensus seq. ND
Comment None

Regulated Gene Sigma Regulation Location Binding seq.(cis-element) Experimental evidence Organism
dnrI None Promoter -50:+10 AAGTGCCGTACACACTTTCATGGCGGGCATTCACTTGCGAGGATGGAGCGAGCAAACGGG Madduri K, et al. (1995): PE
S. peucetius
drrC None Promoter -50:+10 TCCTGGTCAGGAACGCGCCGCGAGCTCTGGTGACATCTCTGGCCTTGCTCGGCGGAAACA Lomovskaya N, et al. (1996): PE
S. peucetius
dnrD None Promoter -50:+10 GTCCCGGAAACACTTGTACGCCGCCGCAGGGAGAAACAACAATTGTTGACGCGGTCGCCG Madduri K, et al. (1995): S1
S. peucetius
dnrG None Promoter -50:+10 GACGACCCGGCTTCCAGAGGGGGTCGAGCGGCGCCGCAGAGCCTCGGAGTCCGGCGTGAC Tang L, et al. (1996): PE
S. peucetius
dpsE None Promoter -50:+10 GAAGCCGGGTCGTCAAGCGCGGCTCGAGCGCGAGATGTGAGGGTGGGCCCTCCGTCGAAG Tang L, et al. (1996): PE
S. peucetius
dnrO None Promoter -50:+10 AGACGGCGGGAATCGCGGCCATAGAGTGACCGCGATTCGTGCCACCCTGGAAGCATGACC Otten SL, et al. (2000): PE
S. peucetius
dnrO None Promoter -50:+10 ATCGCGATTAGCGGATTCCGTGCAGCAATAGGGTCGGGGTGGCGCAGCGATCAGTCCTCGC Otten SL, et al. (2000): PE
S. peucetius
dnrN None Promoter -50:+10 CACACAGGCACCCATAGCCACTACCTGAATCACCTCTTATAGTCGTACGCAAGCTCGGTT Otten SL, et al. (2000): PE
S. peucetius
sgiA None Promoter -50:+1 TGCATGGGGTCGAGGTGAGTTTCCGCCGGGGACTCGGCAGACTCCGGCACG Hirano S, et al. (2006): ND
S. albogriseolus S-3253
sgiA None Promoter -50:+1 TCGACCATCCCGGATGGCACTCACTCTCCGCACCGGCAAGACTCCTCACCGC Hirano S, et al. (2006): ND
S. venezuelae
polY None Promoter -50:+10 ACTTGGCGGCCACGGCCTGCCGGAGAGCCTGCCACATACACTCTGATCAGCGCATTTCAG Li R,et al. (2010): S1
S. cacaoi
polR None Promoter -50:+10 GTCAGTGCAACGTCACTCTTTCCGCACAGGGGCATGTGTAGCCTGCTCGCCGCACGTACT Li R,et al. (2009): S1
S. cacaoi
polC None Promoter -43:+1 GGGCGAGAGATCGGCAAGGCACCCGGCGCAGACTCCTGGATCAC...99bp...gtg Li R,et al. (2009): S1
S. cacaoi
polB None Promoter -43:+1 GGGCAAGGACCCGGCAGGAAGGCGGCCCCACACTCGTCGGCATT...58bp...atg Li R,et al. (2009): S1
S. cacaoi
blaA None Promoter -50:+10 GGAAACGGAATACATGCCTGCTGGGAGCGGCTCCGCTTACAGTCGGGGCCATGGACGTGG Urabe H, et al. (1992): S1
S. cacaoi
jadJ None Positive -50:+10 CCCTGAATCGGTGAGTCTTGAACGAAGTCCTGGACCGGAACAAGCTTGTCGTGAAGGTCC Wang L, et al. (2009): S1
S. venezuelae
jadR1 None Positive -50:+10 GGTAGAGAAATGACCTTGACAAACCGGCGCACGGGTTTGTAGCGTTCCCGTTGGCGGGAT Wang L, et al. (2009): S1
S. venezuelae
strV None Promoter -50:+10 CGAACGGCTCCTGGTTGACGCACCGTCCGCCGGGCTCGTATCATTGCGCAATGCGCCCGT Beyer S, et al. (1996): PE
S. glaucescens
ppk None Promoter -50:+10 CCAGAGGCTCCCCGCTATCCCACACGTCATGTCCCCGTAACCATCGATTCAGACAGCCTT Chouayekh H, et al. (2002): PE
S. lividans
phoR None Promoter -50:+10 CGCACCCGGATGGCTGGGGCCGGACGGTTCGCCGTGCCTAACCTGGAGACATGFACGTGA Ghorbel S, et al. (2006): S1
S. lividans
phoU None Promoter -50:+10 AGCCAGGGACGGTTCATTTGGGGTGCCGGAAACGGACGCGTACAGGCCGGAACCGTGTAA Ghorbel S, et al. (2006): S1
S. lividans
phoP None Promoter -50:+10 GAGACCGAGCGGTCGTCCTCAGCCCCGCAATCCCCCCATACAGCCCCGTTCGAAACGTT Ghorbel S, et al. (2006): S1
S. lividans
clpP3 None Promoter -50:+10 CGCGGGCAGAGAAGTCCCCTGTCCGGGCCCCGGCGGGCCGAGAGTGGAAAAACCGCGGCG Viala J, et al. (2000): PE
S. lividans
clpP1 None Promoter -50:+3 CCCGCAGAACCGGGATGGCACCGGAGGGTCACCGCGTTAGGGTCCATGAATAC Bellier A, et al. (2004): PE
S. lividans
clpC1 None Promoter -50:+3 GTCGGCAGTTGGAATGAGCGGTCCCCGCTTGCGGGACTAAGCTGCGGAAGGAC Bellier A, et al. (2004): PE
S. lividans
lon None Promoter -50:+10 ACAGCGAACAGGGCTTTGGGGAACAATCCCGGGCTCCCTTTCATTGAGTCGATGTAACTCA Bellier A, et al. (2004): PE
S. lividans
clgR None Promoter -50:+7 CACGACATCGCTCCCCGCACGGCCGCGGCGCGAGGCGGTACGGTGGGGCGTGAAGGA Bellier A, et al. (2004): PE
S. lividans
ramR None Promoter -50:+10 ACGTGCGTACGTGTCGTGTTCCGCCGTCCCGGATGGGGGCACATGGCCCGAGGGCGCGGG Keijser BJ, et al. (2002): RG, S1, DB, OV
S. lividans
sanG-P1 None Promoter -50:+10 CAGACCGCACCCATTTCCCCCCTCCCACCCCCGAGGGGAAGAGGACACGCAAGGCAACCA Liu G, et al. (2005): S1
S. ansochromogenes
sanG-P2 None Promoter -50:+10 AATGGAAACATCAGCCGACTCACCACAGCCGACCCGACCGTCCGTGCCGCAGACCGCACC Liu G, et al. (2005): S1
S. ansochromogenes
sanG-P3 None Promoter -50:+10 GCTCATTCGCGTTCGCCCAGCTCAGGAGAATGCTCGATACACTGATTCCGGCGAGGCATA Liu G, et al. (2005): S1
S. ansochromogenes
sanO None Promoter -50:+10 GCGGGCGGGGCAAGCGAGGCGGCGAGGTCCTTGCAGGGACGCGGCGACATGCTGTGCGGGC Liu G, et al. (2005): DB
He X, et al. (2010): GS, FT, SDM
Wang G, et al. (2003): PE
S. ansochromogenes
sanN None Promoter -50:+10 GTCAGTGCACGGCAAGCCGTCGGCAAGGGCCCCAGCTCCAGGCTGGGCCGCGTAGGGACCA Liu G, et al. (2005): DB
He X, et al. (2010): GS, FT, SDM
Ling HB, et al. (2008): PE
S. ansochromogenes
chiA None Promoter -50:+10 CCGTACCTACCTCTTGACACCTTCAATTGGTCTGGACCACCTTGTACGTCAGCGGTGGCC Fujii T, et al. (2005): HM
S. lividans
srrZ None Promoter -50:+10 ACGGCGGTGGAGATACCGGAGCCGGACGGGAGAACGCGGCTACGGTGCAGACGCGCCGGTG Suzuki T, et al. (2010): HM, S1
S. rochei
fdmC None Promoter -50:+10 CGTGCCGTGGCCTCTTCGAGCCTGCCTCGAGGCGGCTGGACGATGCTCACGCCCGGCCGG Chen Y, et al. (2008): DB, OV, HM, RT-PCR
S. griseus ATCC 49344
fdmD None Promoter -50:+10 GACGTCGAGCTGGCCTGGACCGGCCCTCAAGCCGCCCGGGCCAGCATCACGTCCCGACAG Chen Y, et al. (2008): DB, OV, HM, RT-PCR
S. griseus ATCC 49344
fdmM None Promoter -50:+10 CCCGTCGAGCGCCGCTCCACAGCGAATCGAGCAGGCGGCGCCAGGGTGGCGGCACCACCC Chen Y, et al. (2008): DB, OV, HM, RT-PCR
S. griseus ATCC 49344
fdmM1 None Promoter -50:+10 ATCATCGAGCCGTCTTCGAGGCCGTTTCGACCACCGGGGCCGAAGGTCGGGGCCGGAGGC Chen Y, et al. (2008): DB, OV, HM, RT-PCR
S. griseus ATCC 49344
fdmT1 None Promoter -50:+10 CGCGTCCACCGGCCTTCAAGTGAGTTTCGAGCCCTCCCCCTGAGGCTGACCGCGTCAGAA Chen Y, et al. (2008): DB, OV, HM, RT-PCR
S. griseus ATCC 49344
fdmV None Promoter -50:+10 ACCATCCAGCGCCCCTCCACGCGGTTTCGAGCGGTGCGGGAAACGCTGGACGCCGACGGC Chen Y, et al. (2008): DB, OV, HM, RT-PCR
S. griseus ATCC 49344
fdmR1 None Promoter -50:+10 CTTGTCGAGTACCGCTCAAGCAGAAGTCAAGTAATCGCCCGCACGCTCACGAAGCGCATC Chen Y, et al. (2008): DB, OV, HM, RT-PCR
S. griseus ATCC 49344
fdmW None Promoter -50:+10 CGGCTCCGGCGCTGTTCGAGCCGGCGTCGAGCCGCCGGTGCGAGCCTGCCCGTATGCAAC Chen Y, et al. (2008): DB, OV, HM, RT-PCR
S. griseus ATCC 49344
fdmR2 None Promoter -50:+10 GCCTTCCAGCCGTTCACCAGCGTCCCTCGAGTCGGCGCGGGCACCGTGGGCGGCACGGGG Chen Y, et al. (2008): DB, OV, HM, RT-PCR
S. griseus ATCC 49344
lat None Promoter -50:+10 CGTCCGAGAGAGCTGGAAGAGGGGTCCAAGAGCATGGTGGGTCATTATTGTGATCCTAAA Kyung YS, et al. (2001): HM
S. clavuligerus
areB None Promoter -50:+10 CGGGTTCTCCGGAACTTTGAACTTGCGTTTCACACTGTGAGACGCAAGTATCGTTGCATG Santamarta I, et al. (2007): S1, PE, DB, GS, FT, HM, RT-PCR
S. clavuligerus
pimK None Promoter -50:+10 ACGGGGCCAAGTCTAAGGATTTCCCGACGCCCGCCGTGACATCAAAGGGAGGTGCGACCG Santos-Aberturas J, et al. (2011): HM, RACE
S. natalensis
pimA None Promoter -50:+10 TCCGCCGGGATCTAGGGGTTTTCCGGTGTGCGGTGCGCTGCACTGTCCGGGTGCTGCTAT Santos-Aberturas J, et al. (2011): HM, RACE
S. natalensis
pimE None Promoter -50:+10 CCGCGTACCTCTGGCATTTCCCCCAGTCTTTCCTGACCAGGATTACCGGCATGTTCGAGA Santos-Aberturas J, et al. (2011): HM, RACE
S. natalensis
pimJ None Promoter -50:+10 GTGTGCCCGGAATTTCTTGACATCATGACCGGCCGCTTGGAAGCGTGCGAGGACCCAGCG Santos-Aberturas J, et al. (2011): HM, RACE
S. natalensis
pimI None Promoter -50:+10 GGCGCGGATACTAGGTGTTTTCCGGCATTCCTCCTTGTCGAATGGGCGTGTGAATACCGG Santos-Aberturas J, et al. (2011): HM, RACE
S. natalensis
pimS2 None Promoter -50:+10 TGTGAGGAATCTAGGGAATTCCATGACAAACACCGTCGAAACTGGGCGAGTGGCGTGCGG Santos-Aberturas J, et al. (2011): HM, RACE
S. natalensis
pimD None Promoter -50:+10 CGAGCCATGTGTAGGGATTTCCTGGTCCGGAGACGGCTAGCGTCACCCCTCACCCGTCAT Santos-Aberturas J, et al. (2011): HM, RACE
S. natalensis
pimS1 None Promoter -50:+10 GCAGCATCAACTAGGGAAACCCGCAGTCCACCTGACGAAGGATGGCGGGGAAACGGTCGG Santos-Aberturas J, et al. (2011): HM, RACE
S. natalensis




DBSCR:

Copyright: BASE, RIKEN
Contact: Yuko Makita