DBSCR - Transcription factor

   Database of transcriptional regulation in Streptomyces coelicolor
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Transcription factor: SigR

Gene ID SCO5216 (link to ScoCyc)
Factor type Sigma70
Pfam PF04542 (Sigma-70 region 2 ) PF08281 (Sigma-70, region 4 )
Consensus seq. GGAAT-N18-GTT
Comment Park JH, et al.(2008) sugested that mshB(SCO5126), mshC(SCO1663), mshD(SCO4151) are indirect target of SigR by S1 mapping at various time points. Kim YJ, et al. 2008(PMID: 19087294) also suggested sigR is also strongly upregulated by the pH shock.
Link to Weight matrix & Motif alignment

Regulated Gene Absolute position Location Binding seq.(cis-element) Experimental evidence
glnR 4577141..4577204 -50:+10 GCTCATGTCGGCTATTCTGCTGGGCAGAGGACTCGGGCAACGTAGCCCCCGGGTCCTTTTGTGC Wray LV Jr, et al. (1993): PE
Kang JG, et al. (1997): GS, RO
hrdD 3511488..3511547 -50:+10 AATCGAGGGGCAGGTTGGGAATTCTGTCCGGATTCCAGTCGTTGTTTCCATCGGATGCAG Buttner MJ, et al. (1990): S1
Kang JG, et al. (1997): GS, RO
rpmG3 ND ND ND Owen GA, et al. (2007): HM, DB
trxB 4281607..4281666 -50:+10 TGTGCCCGGGCACAGCGGGAATGCGCGCCCCGTAGGATCCGTTAGGTGGGGTGAGAGTTC Paget MS, et al. (1998): S1, DB
sigR 5674953..5675012 -50:+10 CTCGGCTGAACGCCTGGGAATGACCGGCGGACGGCCACTGTTGTGCCGTTCGTACGTTGC Paget MS, et al. (1998): S1, DB
mshA 4613151..4613207 None CCGGAAAACCGGAATGGAGCACGGCCCGTCCGGTGTTCCCAACCCTTGGAGGGCGAC Park JH, et al. (2008): S1, DB, HM
mca 5401136..5401191 None CTCGGGCCCCGGAATTATTCCGCTCCCGATTCGGTCACTATAGAAGCCTGCGATTG Park JH, et al. (2008): S1, DB, HM
SC8E4A.04c 2861516..2861559 None GCAGCCGGGAATGGGCGGGCCGGTCGTTCGGTTGCCGGGTTGAG Paget MS, et al. (2001): HM, DB
SCE87.13 3463972..3464015 None CGGGTGAGGAATGGTGGACGGTCGGTGGCGGTTGCATCCACTGT Paget MS, et al. (2001): HM, DB
folE 3768015..3768058 None CAGGCCCGGAATGTATGCCGCACCCCCCAGGTTCTAGCCTTGGG Paget MS, et al. (2001): HM, DB
SC6G10.34c 2324759..2324802 None CCGTCCCGGAATGAATCCGCGGTCCCGCCGGTTGGAACCGTCGG Paget MS, et al. (2001): HM, DB
rpmE3 5829882..5829925 None ACACCGGGGAATAGTTCACCCCGCCCCCCGGTTTTGGGGGATGG Paget MS, et al. (2001): HM, DB
SCE22.04 3494444..3494487 None ATCCCGCGGAATAGGTCACTATGGACCGTCGTTAGCACTCATCG Paget MS, et al. (2001): HM, DB
SCE19A.11c 3163161..3163204 None CGGACCGGGAATCGATACGATGAGCCCATGGTTCTCCTCGACGT Paget MS, et al. (2001): HM, DB
SC7H2.09c 2131361..2131404 None CGCACACGGAATAGCGGGTCCGGCGCGTGCGTTGATCCCTTGAA Paget MS, et al. (2001): HM, DB
pepN 2873622..2873665 None GGCCGCGGGAATGGGTCGTGCCGTGTGGGCGTTCATGCGTCAAG Paget MS, et al. (2001): HM, DB
SC7H2.11c 2132988..2133031 None TCTCCCGGGAATGCCCCACCCCGCAAGGGTGTTGTGACGTACGA Paget MS, et al. (2001): HM, DB
ssrA 3226998..3227041 None GCCGCCGGGAATAGGCTGGCACGCGTCCGTGTTGGTCACGTACG Paget MS, et al. (2001): HM, DB
SC3D11.22 5950659..5950702 None CGGCGGCGGAATAGCCCGCCCGGCCCGGAGGTTGCTGCTGCTCA Paget MS, et al. (2001): HM, DB
trxC 931256..931299 None CGTGCGCGGAATACCCACCAGGTCGGCAGTGTTGTGCCGACGGC Paget MS, et al. (2001): HM, DB
Paget MS, et al. (2001): HM,GS,DB
SCE20.23 3107867..3107910 None TGGCCGGGGAATCAGCGGTGGGTACCCGTGGTTTGGCAGGCAGA Paget MS, et al. (2001): HM, DB
SCM1.15 928614..928657 None CAGTAGTGGAATGTTCAACCGTGCGGCGTGGTTGCAGGGCCCGA Paget MS, et al. (2001): HM, DB
SC6A5.08 7515732..7515775 None GTTCTCAGGAATCTTGAAGTCAATCGGTGTGTTGTTGTGATGCG Paget MS, et al. (2001): HM, DB
rbpA 1517290..1517333 None CGGAACGGGAATCTTTACCGCCGCCCGGACGTTGACCGGATGAC Paget MS, et al. (2001): HM, DB
2SC3B6.11c 5644723..5644766 None CGCGACGGGAATGGTCGTGCCGCCACGGACGTTCACTCCGTGCG Paget MS, et al. (2001): HM, DB
relA 1619263..1619306 None GCCCGGAGGAATCCGGCGCCCGCCCCAGGCGTTGCAGGGGTTGA Paget MS, et al. (2001): HM, DB
SC4B5.01c 7248802..7248845 None ACGGTCAGGAATGCGTCCGGGCTCGTGATCGTTGACGATATGAG Paget MS, et al. (2001): HM, DB
hflX 6334409..6334452 None GGCCCCGGGAATCTCCCCGGTGGTTCGCACGTTGTACACGATGT Paget MS, et al. (2001): HM, DB
cinA 6292363..6292406 None CCGCCGGGGAATCGCCGAACGCAGAGCGGCGTTGAAGGAGACGG Paget MS, et al. (2001): HM, DB
SCE25.24c 3377270..3377313 None CGTGAGGGGAATCACTGATCGGCGTAGCGTGTTGAGTCGCAAGG Paget MS, et al. (2001): HM, DB
SCP8.26c 5610120..5610163 None AGCGTAGGGAATGTTTGCAGAGGGCATCCCGTTGACCACTACGG Paget MS, et al. (2001): HM, DB
SCE9.22 3780246..3780289 None ATTCCTGGGAATCATATTCCTTGGAATACGGTTGGCCCGAACAG Paget MS, et al. (2001): HM, DB
guaB 5181270..5181313 None TGATCGTGGAATGAGCCACGTCCACTTCCCGTTAGCATGGACAT Paget MS, et al. (2001): HM, DB
moeB 5626346..5626389 None GTGTCTCGGAATGAAAAAGGCCATGGCAGTGTTACGTGGAGAAC Paget MS, et al. (2001): HM, DB



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Contact: Yuko Makita