DBSCR - Regulated genes

   Database of transcriptional regulation in Streptomyces coelicolor
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Regulated gene: hrdD

Operon: No data
Genes Gene ID Synonyms Direction Genome position Function
hrdD SCO3202 SCE22.19c, hrdD, sig46 - 3510381..3511379 RNA polymerase principal sigma factor

Promoters

Binding
factor		 Promoter
name		 Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
SigE hrdD-p1 Promoter -50:+10 3511740..3511799 GTGACTCCGCGTCCGTGGCAACCCTCAGGCGGTACGGGCCGTCTTCAGGGTGGGAGAGCA Buttner MJ, et al. (1990): S1
Kang JG, et al. (1997): GS, RO
Paget MS, et al. (1999): S1, DB
SigR hrdD-p2 Promoter -50:+10 3511488..3511547 AATCGAGGGGCAGGTTGGGAATTCTGTCCGGATTCCAGTCGTTGTTTCCATCGGATGCAG Buttner MJ, et al. (1990): S1
Kang JG, et al. (1997): GS, RO
SigE hrdD-p2 Promoter -50:+10 3511488..3511547 AATCGAGGGGCAGGTTGGGAATTCTGTCCGGATTCCAGTCGTTGTTTCCATCGGATGCAG Paget MS, et al. (1999): S1, DB
CseB hrdD-p1 Positive ND ND ND Paget MS, et al. (1999): DB
CseB hrdD-p2 Positive ND ND ND Paget MS, et al. (1999): DB
SigB hrdD-p3 Promoter ND ND ND Lee EJ, et al. (2005): AR, DB

Comments:
SigE hrd-p1 is recognized by sigE in vitro and is highly sigE dependent in vivo.
SigE hrdD-p2 is not recognized by sigE in vitro but is partially sigE dependent in vivo.
CseB Transcript of hrdD-p1 showed ~20-fold low level in CseB mutant. hrdD transcription is partially cseB dependent.
CseB Transcript of hrdD-p2 showed ~20-fold low level in CseB mutant. hrdD transcription is partially cseB dependent.

Terminator

No Data

Overview

DBSCR:

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Contact: Yuko Makita