DBSCR - Regulated genes

   Database of transcriptional regulation in Streptomyces coelicolor
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Regulated gene: abeB

Operons: abeBCD

Genes Gene ID Synonyms Direction Genome position Function
abeB SCO3288 SCE15.05, abeB + 3636856..3637587 putative integral membrane protein
abeC SCO3289 SCE15.06, abeC + 3637594..3639204 putative large membrane protein
abeD SCO3290 SCE15.07, abeD + 3639201..3639950 hypothetical protein

Operon evidence: S1, RT-PCR
Reference: Hindra, et al. (2010)
Comments: Hindra, et al. propose that SCO3287-SC3290 renamed abeABCD and that SCO3291 renamed abeR.

Promoters

Binding
factor		 Promoter
name		 Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
AbeR - Positive -76:-23 3636701..3636754 ATACCGGAAGCCGATCGGAAGCGCATCGGAACCCCGGAAATCTGGTTCCGGAAG Hindra, et al. (2010): FT, GS, OV, sqRT-PCR
Unkown_sigma - Promoter -50:+10 3636727..3636786 CGGAACCCCGGAAATCTGGTTCCGGAAGCGCCGCCACTGGTCGGATCGGTCGATGCACAA Hindra, et al. (2010): FT, GS, OV, sqRT-PCR

Comments:
AbeR The expression of abeBCD was activated by the binding of AbeR to four heptameric repeats upstream of a promoter within abeA.
Unkown_sigma The expression of abeBCD was activated by the binding of AbeR to four heptameric repeats upstream of a promoter within abeA.

Terminator

No Data

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Contact: Yuko Makita