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   Database of transcriptional regulation in Streptomyces coelicolor and its closest relatives

Transcription factors
Regulated genes
Revised TLS

Transcription Factors
Regulated genes
S. coelicolor    Sigma factors
Helix turn helix family
Other family
S. griseus Sigma factors
Helix turn helix family
Other family
Others Helix turn helix family
Other family

   S. coelibolor
   S. griseus
   Other streptomyces

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Predicted terminators
M.J.L. de Hoon et al.,PLoS 2005

About this database

Recent works in bacterial transcriptional network analysis reveal that transcriptional regulations are flexible and evolve rapidly. It is therefore important to construct reference databases on transcriptional regulation of multiple model organisms in addition to those of Escherichia coli and Bacillus subtilis. We constructed such a reference database, DBSCR, for Streptomyces coelicolor, a model organism producing antibiotics and its closest relatives. We also provide a motif search function based on weight matrices to detect potential transcription factor binding sites in sequences submitted by users.

FAQ etc.

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Data volume       

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Contact information

 Yuko Makita
 Kenta Nakai
...RIKEN Center for Sustainable Resource Science (CSRS)
...Human Genome Center, IMS, University of Tokyo
Copyright: HGC 2015
Contact: Yuko Makita