DBSCR - Transcription factor

Database of transcriptional regulation in Streptomyces coelicolor

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Transcription factor: PhoP

Gene ID	SCO4230 (link to ScoCyc)
Factor type	ND
Pfam	PF00072 (Response regulator receiver domain ) PF00486 (Transcriptional regulatory protein, C terminal )
Consensus seq.	G{G/T}TCAYYYR{C/G}G (direct repeats)
Comment	Phosphate regulation, two-component system: PhoR-PhoP
Orthologous link	Streptomyces others
Link to	Weight matrix & Motif alignment

Regulated Gene	Sigma	Regulation	Absolute position	Location	Binding seq.(cis-element)	Experimental evidence
phoA	None	Positive	`2457939..2457980`	`-134:-93`	`CTCGTCGGTGGTTCTCACGGTGTTCATGACTCGGCAGCGTAC`	Apel AK, et al. (2007): DB, GS, FT
phoA	None	Positive	`2457939..2457980`	`-107:-66`	`CTCGTCGGTGGTTCTCACGGTGTTCATGACTCGGCAGCGTAC`	Apel AK, et al. (2007): DB, GS, FT
phoD	None	Positive	`2218451..2218545`	`-94:+1`	`CGGTGGCCGGTTCCGGTGATCGCCGGCTGACGAGTGGGCGAACTTTTGCGAGTTCGCCCACTCGCGCGCGTACCGATCAGTAACCTGATCGGCCG`	Apel AK, et al. (2007): DB, GS, FT
pstS	None	Positive	`4557927..4557960`	`-66:-33`	`ACAGGGGTTCACCCGGCGTTCATTTACGCCCTTC`	Sola-Landa A, et al. (2005): RG, GS, FT
phoU	None	Negative	`4633087..4633142`	`-87:-32`	`AACACTCGTCGCCCAGAGTTCACCTTGGAGCCAGGGACGGTTCATTTGGGGTGCCG`	Sola-Landa A, et al. (2005): RG, GS, FT
glnR	None	Negative	`4577075..4577126`	`-27:+25`	`CCGGGCGGGCGCCGGGCGTTCACCTCCCGGACGCCACCAGTACGAAGCAGTG`	Rodriguez-Garcia A, et al. (2009): GS,FT,DB
glnA	None	Negative	`2364755..2364825`	`-150:-80`	`CTGGGGAGGGAGCCGGTTAACTTCTGCGAAACAAATGGGTCACGCCCGAGAAATCACCCGTCCCTAGGGTC`	Rodriguez-Garcia A, et al. (2009): GS,FT,DB
glnII	None	Negative	`2374166..2374240`	`-74:+1`	`ACAACGAGCCCGGGTAACACGGGGTTCACCTACGGGCAACGGTCGGGAAATCGCCCGTTGGCACGCTGCACGGCA`	Rodriguez-Garcia A, et al. (2009): GS,FT,DB
amtB	None	Negative	`6085861..6085955`	`-94:+1`	`GTTCACCCACGCGTAACACGCACCGTGCCTTCGTCACGGCGGCGAAACAACGAGGGGCTTCCACCGAAACCGCGCTGCGTCAATGTCGTGGCGCA`	Rodriguez-Garcia A, et al. (2009): GS,FT,DB
afsS	None	Negative	`4842708..4842767`	`-50:+10`	`GTAGCCGGAGCGTTCAGCGTTCGTTTATCTCCCCCTGGCACTGTCATCTCCGTCAGACCG`	Santos-Beneit F,et al. (2009): GS,FT
phoR	None	Positive	`4633093..4633138`	`-107:-62`	`CCCAAATGAACCGTCCCTGGCTCCAAGGTGAACTCTGGGCGACGAG`	Sola-Landa A,et al. (2005): PE, GS, FT
glpQ1	None	Positive	`1676075..1676137`	`-79:-17`	`GCCCCACACGACACCTCAGTGCACCCGCGTGTTCCGGCCGCGGTCTCCCGCTCGTCATGTACG`	Rodr_guez-Garc_a A, et al. (2007): 2D-gel, DB, GS Santos-Beneit F, et al. (2009): DB, RG, FT, PE
glpQ2	None	Positive	`2108304..2108365`	`-74:-12`	`AGTTGAGCAACTCCATTCAGCCTGTGGCCACTCCGCACCCCCCTTTCGTTGACTCTCTGATG`	Rodr_guez-Garc_a A, et al. (2007): 2D-gel, DB, GS Santos-Beneit F, et al. (2009): DB, RG, FT, PE
SCO7697	None	Positive	`8532567..8532619`	`-174:-122(from translation start site)`	`GGCCGATCCGTTCACCCCTCGGCCACGCATCCGTCGCCGGCGGGCTGCCCGGG`	Rodr_guez-Garc_a A, et al. (2007): 2D-gel, DB, GS Sola-Landa A, et al. (2008): HM, DB, GS, FT Martin JF, et al. (2011): Review
SCO0034	None	Positive	`28874..28914`	`-166:-126(from translation start site)`	`TCAACGAGGCCGGTGAACCGCGGATGAGGAGAGGGTGAACG`	Rodr_guez-Garc_a A, et al. (2007): 2D-gel, DB, GS Sola-Landa A, et al. (2008): HM, DB, GS, FT
SCO2878	None	Positive	`3131254..3131308`	`-96:-42(from translation start site)`	`GTTCCGCGCGCGTCCGTGCGGTGTTCGCCTGCCGCACCCCTGCTGTTCGCCGTCC`	Rodr_guez-Garc_a A, et al. (2007): 2D-gel, DB, GS Sola-Landa A, et al. (2008): HM, DB, GS, FT
SCO4879	None	Positive	`5310467..5310525`	`-88:-30(from translation start site)`	`CCCGATTTCCCATTCGGCGATGTGCTGTTCACCATCTGTTGGATTCCGGTTGGGCGGTT`	Rodr_guez-Garc_a A, et al. (2007): 2D-gel, DB, GS Sola-Landa A, et al. (2008): HM, DB, GS, FT
SCO4878	None	Positive	`5310397..5310443`	`-87:-41(from translation start site)`	`CCGCTTCACCGCTTCGACACGCCTCGTTCACCGCGTGTCAAGGTTCA`	Rodr_guez-Garc_a A, et al. (2007): 2D-gel, DB, GS Sola-Landa A, et al. (2008): HM, DB, GS, FT
SCO4261	None	Negative	`4675264..4675298`	`-76:-42(from translation start site)`	`GGGCACGTGAACAGGGGGGAAACGGTTGCTCAACT`	Rodr_guez-Garc_a A, et al. (2007): 2D-gel, DB, GS Sola-Landa A, et al. (2008): HM, DB, GS, FT
SCO1906	None	ND	`2042543..2042606`	`-155:-92(from translation start site)`	`GCGGCAGGCGGCGGCCCGAGGGCGGGGGAGAGGTCTCCGCCAGTTCAACTCCCGTTCAGGCGCG`	Rodr_guez-Garc_a A, et al. (2007): 2D-gel, DB, GS Sola-Landa A, et al. (2008): HM, DB, GS, FT Martin JF, et al. (2011): Review
SCO3790	None	Positive	`4167973..4168013`	`-119:-79(from translation start site)`	`TCCCCCAAGGATTCCGCGGGTTCACCCGGCGTTCACCGCGA`	Rodr_guez-Garc_a A, et al. (2007): 2D-gel, DB, GS Sola-Landa A, et al. (2008): HM, DB, GS, FT Martin JF, et al. (2011): Review
SCO1196	None	Positive	`1268576..1268625`	`-132:-83(from translation start site)`	`TCCGGTGAGGTGAACGACCGAAGTGAACGACCGGCGGCGGTCCGGCCAAC`	Sola-Landa A, et al. (2008): HM, DB, GS, FT
SCO1394	None	Positive	`1479724..1479748`	`-51:-27(from translation start site)`	`CACGGGTGAACGGCAGTTGAACGAC`	Sola-Landa A, et al. (2008): HM, DB, GS, FT
SCO2262	None	Negative	`2432235..2432270`	`-105:-70(from translation start site)`	`CCGCGCGGTCCGGCGTTCGCCTCGGATTCACCCGGC`	Sola-Landa A, et al. (2008): HM, DB, GS, FT
hrdA	None	Negative	`2654406..2654439`	`-112:-79(from translation start site)`	`GGTTTTCCGGGGGTAACCCCTCGGTCACGCCCCG`	Sola-Landa A, et al. (2008): HM, DB, GS, FT
SCO5447	None	Positive	`5929956..5930006`	`-264:-214(from translation start site)`	`AGCAACGATTCCGTTTATCGAACGTGAACGCCCGGTCAACGAACCATTTCC`	Sola-Landa A, et al. (2008): HM, DB, GS, FT
SCO6169	None	ND	`6773664..6773690`	`-220:-194(from translation start site)`	`GCTCGTTCATGTGCTGTTCACGTGGAA`	Sola-Landa A, et al. (2008): HM, DB, GS, FT

DBSCR - Transcription factor

Database of transcriptional regulation in Streptomyces coelicolor

Transcription factor: PhoP

DBSCR: