DBSCR - Regulated genes

   Database of transcriptional regulation in Streptomyces coelicolor
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Regulated gene: amtB

Operons: amtB-glnKD

Genes Gene ID Synonyms Direction Genome position Function
amtB SCO5583 SC7A1.27, amtB + 6086031..6087377 ammonium transporter
glnK SCO5584 SC7A1.28, glnB, glnK + 6087374..6087712 nitrogen regulatory protein P-II
glnD SCO5585
+ 6087777..6090284 putative protein pII uridylyltransferase

Operon evidence: amtB-glnK: S1 protection analysis, glnKD: RT-PCR
Reference: Fink D, et al. (2002)

Promoters

Binding
factor		 Promoter
name		 Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
GlnR amt-p1 Positive -70:+10 2374170..2374249 CGAGCCCGGGTAACACGGGGTTCACCTACGGGCAACGGTCGGGAAATCGCCCGTTGGCACGCTGCACGGCAGTAGACGCG Fink D, et al. (2002): GS, HM
GlnRII - Positive ND ND ND Fink D, et al. (2002): GS
Unknown_sigma amt-p1 Promoter -50:+10 6085905..6085964 AAACAACGAGGGGCTTCCACCGAAACCGCGCTGCGTCAATGTCGTGGCGCATAACCGGCC Fink D, et al. (2002): S1
PhoP - Negative -94:+1 6085861..6085955 GTTCACCCACGCGTAACACGCACCGTGCCTTCGTCACGGCGGCGAAACAACGAGGGGCTTCCACCGAAACCGCGCTGCGTCAATGTCGTGGCGCA Rodriguez-Garcia A, et al. (2009): GS,FT,DB

Comments:
Unknown_sigma Fink D, et al. (2002) confirmed three transcription start sites (P1, P2, P3). The exact TSS of P2 and P3 are not shown.

Terminator

No Data

Overview

DBSCR:

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Contact: Yuko Makita