DBSCR - Transcription factor

   Database of transcriptional regulation in Streptomyces coelicolor
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Transcription factor: GlnR

Gene ID SCO4159 (link to ScoCyc)
Factor type ND
Pfam PF00486 (Transcriptional regulatory protein, C terminal )
Consensus seq. (GG[at]AAC-N5)*4,or gTnAc-N6-GaAAC-N6
Comment None
Link to Weight matrix & Motif alignment

Regulated Gene Sigma Regulation Absolute position Location Binding seq.(cis-element) Experimental evidence
glnA None Positive 2364762..2364841 -70:+10 GGGAGCCGGTTAACTTCTGCGAAACAAATGGGTCACGCCCGAGAAATCACCCGTCCCTAGGGTCGAGGAAGCGTGTGCCA Fink D, et al. (2002): S1, GS, HM
Wary LV Jr, et al. (1991): S1, HB
Tiffert Y, et al. (2008): GS, DB, OV, FT
amtB None Positive 2374170..2374249 -70:+10 CGAGCCCGGGTAACACGGGGTTCACCTACGGGCAACGGTCGGGAAATCGCCCGTTGGCACGCTGCACGGCAGTAGACGCG Fink D, et al. (2002): GS, HM
glnII None Positive 2374168..2374227 -73:-13 AACGAGCCCGGGTAACACGGGGTTCACCTACGGGCAACGGTCGGGAAATCGCCCGTTGGC Tiffert Y, et al. (2008): GS, DB, OV
nirB None Positive 2675974..2676033 None CTGAGGGCAGCGTTCCCCGTGGGAAACAGAAGGGATGCGGCCGGGTAACACCCGCACCGC Tiffert Y, et al. (2008): GS, DB
gdhA None Negative 5111924..5111983 None TGGCCATGGGGTTTACATGCGCGTAACACTTAAGTGTCCCGCGCGCGGCAACGGCGCCGA Tiffert Y, et al. (2008): GS, DB, FT
ureA None Negative 1310739..1310798 None CGACTGCATCGGTAATCAATCGGTCAAAACCGGGTGACGTGGCCGTCACACTCTAGCCCT Tiffert Y, et al. (2008): GS, DB
SCO0255 None Negative 245769..245828 None CCCAACCCCCCGTTGACAGGTGCAAACGCGTTCGTAATATGGCGGAAACACGCTCATCGG Tiffert Y, et al. (2008): GS, DB
SCO0888 None Negative 933604..933663 None CGCGGTCCGTTTAAGATGCTAGAAATTAAACGGACCCCGGTCCGGATTGTTACCGCAGTG Tiffert Y, et al. (2008): GS, DB
SCO2400 None Negative 2572324..2572383 None TTCGATATTTCGTCACTCGTTCGAAATGCTGGCGTGACAGTAAGGACGAGGTGGTGGGAG Tiffert Y, et al. (2008): GS, DB
SCO2404 None Negative 2575654..2575713 None GCCGGGTCCGCTCAACCGGTTCGAGATCTCGTCATAACGTTCCGGAAACTCCCTTCTCAA Tiffert Y, et al. (2008): GS, DB
SCO2195 None No change in GlnR mutant 2362967..2363026 None GGCGACGCGACTTCATGTGCGTTTGACCGGCGGGTCACGCCCTGGTAACACCAATCAGTG Tiffert Y, et al. (2008): GS, DB
SCO7155 None No change in GlnR mutant 7949035..7949094 None TATCTCACGTGCACAGTGCATCGGAATGAGCAGGTGACGTGTCCGAAACAGTGTGAACGA Tiffert Y, et al. (2008): GS, DB
SCO1863 None None 1998254..1998313 None ATGTGGATCGGGTCACAATCGCGTAACCCGTGCGAGACGTGTCCGAAATGTGAAGATCGT Tiffert Y, et al. (2008): GS, DB
nasA None Positive 2662536..2662610 -72:+3(from translation start site) GGAGGTCGCCGTCCCCGCCGTGTAACAGGGCGCCGCCCGGTCGCGTAACACGGCAGCCGCAGGCTGGGCGGCATG Wang J, et al (2009): DB,RT-PCR,FT



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Contact: Yuko Makita