DBSCR - Regulated genes

   Database of transcriptional regulation in Streptomyces coelicolor
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Regulated gene: desA

Operons: desABCD

Genes Gene ID Synonyms Direction Genome position Function
desA SCO2782 SCC105.13, desA + 3035641..3037083 putative pyridoxal-dependent decarboxylase
desB SCO2783 SCC105.14, desB + 3037106..3038347 putative monooxygenase
desC SCO2784 SCC105.15, desC + 3038344..3038898 putative aceytltranferase
desD SCO2785 SCC105.16, desD + 3038895..3040682 conserved hypothetical protein

Operon evidence: transcriptome analysis by RT-PCR
Reference: Tunca S, et al. (2007)

Promoters

Binding
factor		 Promoter
name		 Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
Unknown_sigma - Promoter -50:+10 3035529..3035588 ACCCACAGGCACGCGTTTGATCGACTTAACTTAGGTTAGGCTCACCTAAGTCGTAGCGAG Tunca S, et al. (2007): PE
DmdR1 - Negative -25:+4 3035554..3035582 TTAACTTAGGTTAGGCTCACCTAAGTCGT Tunca S, et al. (2007): DB, GS

Comments:
DmdR1 DmdR1 requires a bivalent metal to bind to the iron box.

Terminator

No Data

Overview

DBSCR:

Copyright: BASE, RIKEN
Contact: Yuko Makita