DBSCR - Regulated genes

   Database of transcriptional regulation in Streptomyces coelicolor
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Regulated gene: malX2

Operons: malX2-nagE1-nagE2

Genes Gene ID Synonyms Direction Genome position Function
malX2 SCO2905 SCE19A.05c, malX2 - 3157315..3157548 hypothetical protein
nagE1 SCO2906 SCE19A.06, nagE1 + 3157707..3159002 putative PTS transmembrane component
nagE2 SCO2907 SCE19A.07, nagE2 + 3159229..3160479 putative PTS transmembrane component

Reference: Parche S, et al. (2000), Nothaft H, et al. (2010)
Comments: malX2 renamed nagF by H.Nothaft, et al. nagF-nagE1-nagE2 (sco2905?2907)

Promoters

Binding
factor		 Promoter
name		 Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
DasR - Negative ND(between malX2-nagE1 region) 3157666..3157681 ACTGGTCTACACCAGT Rigali S, et al. (2004): HM, GS
Rigali S, et al. (2006): DB(by sqRT-PCR)

Comments:
DasR To build the matrices specific for PTSNag, we chose the cis-elements upstream crr-ptsI, between malX2 and nagE1, upstream nagE2, and upstream ptsH as training set of sequences.

Terminator

No Data

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Copyright: BASE, RIKEN
Contact: Yuko Makita