DBSCR - Transcription factor

Database of transcriptional regulation in Streptomyces coelicolor

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Transcription factors

Regulated genes

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Transcription factor: DasR

Gene ID	SCO5231 (link to ScoCyc)
Factor type	ND
Pfam	PF00392 (Bacterial regulatory proteins, gntR family )
Consensus seq.	ND
Comment	Important transcription factor for development

Regulated Gene	Sigma	Regulation	Absolute position	Location	Binding seq.(cis-element)	Experimental evidence
dasA	None	Negative	ND	ND	ND	Rigali S, et al (2004): GS, HM Colson S, et al (2008): DB (by RT-PCR)
crr	None	Negative	`1474151..1474186`	`-140:-105(from translation start site)`	`CCGTGAGGAGTGTGGTCTAGACCTCTAATCGGAACA`	Rigali S, et al. (2008): HM, GS, FT Rigali S, et al. (2004): HM, GS Rigali S, et al. (2006): GS, DB(by sqRT-PCR)
redZ	None	Negative	`6439032..6439071`	`-212:-172(from translation start site)`	`ACAAGATCTTCTTGAGGTGGAAACCACTTCGTATCAGTCT`	Rigali S, et al. (2008): HM, GS, sqRT-PCR
actII-ORF4	None	Negative	`5528023..5528062`	`-71:-31(from translation start site)`	`CACATTGAAATCTGTTGAGTAGGCCTGTTATTGTCGCCCC`	Rigali S, et al. (2008): HM, GS, sqRT-PCR
ptsH	None	Negative	`6394361..6394376`	ND(upstream region of ptsH)	`ACTGGTCTAGACAACT`	Rigali S, et al. (2008): HM, GS Rigali S, et al. (2004): HM, GS Rigali S, et al. (2006): DB(by Western blot)
ptsH	None	Negative	`6394376..6394391`	ND(upstream region of ptsH)	`ACTGGTCTAGACAAGA`	Rigali S, et al. (2008): HM, GS Rigali S, et al. (2004): HM, GS Rigali S, et al. (2006): DB(by Western blot)
malX2	None	Negative	`3157666..3157681`	ND(between malX2-nagE1 region)	`ACTGGTCTACACCAGT`	Rigali S, et al. (2004): HM, GS Rigali S, et al. (2006): DB(by sqRT-PCR)
nagE2	None	Negative	`3159180..3159195`	`-49:-34(from translation start site; upstream region of nagE2)`	`ACAGGTCTACACCACT`	Rigali S, et al. (2004): HM, GS Rigali S, et al. (2006): DB(by sqRT-PCR) Nothaft H, et al. (2010): HM
nagE2	None	Negative	`3159197..3159212`	`-32:-14(from translation start site; upstream region of nagE2)`	`AGTGGTGTAGACCACC`	Rigali S, et al. (2004): HM, GS Rigali S, et al. (2006): DB(by sqRT-PCR) Nothaft H, et al. (2010): HM
nagB	None	Negative	`5698128..5698143`	`-67:-52(the opposite strand, from translation start site)`	`ATTGGTCTAAACCACA`	Rigali S, et al. (2006): HM, GS, DB(by sqRT-PCR)

DBSCR:

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Contact: Yuko Makita