DBSCR - Transcription factor

   Database of transcriptional regulation in Streptomyces coelicolor

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Transcription factor: AbsC

Gene ID SCO5405 (link to ScoCyc)
Factor type MarR-family
Pfam None
Consensus seq. ND
Comment Previous efforts to ?nd new regulators affecting antibiotic production have utilized DNA af?nity capture assay (DACA), which found a new MarR-like regulator(SCO5405) that is involved in both actinorhodin (ACT) and undecylprodigiosin (RED). This regulator has been separately named AbsC by another group.

Regulated Gene Sigma Regulation Absolute position Location Binding seq.(cis-element) Experimental evidence
aceE1 None Negative ND ND ND Yang YH, et al. (2010): DP, GS, RT-PCR
aceE2 None Negative ND ND ND Yang YH, et al. (2010): DP, GS, RT-PCR
SCO7681 None Negative 8506174..8506212 None GATTATCATTTCTATAGTTCACATCGTAATCACACGACG Hesketh A, et al. (2009): AR, DB, FT, GS, OV, qRT-PCR
SCO7682 None Negative 8506180..8506219 -103:-64(from translation start site) GTGATTACGATGTGAACTATAGAAATGATAATCATTTCTA Hesketh A, et al. (2009): AR, DB, FT, GS, OV, qRT-PCR




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Copyright: BASE, RIKEN
Contact: Yuko Makita