DBSCR - Transcription factor

   Database of transcriptional regulation in Streptomyces coelicolor

Transcription factors
Regulated genes
Revised TLS

Transcription factor: SCO6008

Gene ID SCO6008 (link to ScoCyc)
Factor type ROK-family
Pfam None
Consensus seq. ND
Comment SCO6008 contains an HTH motif of the NagC/XylR family and shows a high homology to XylR, a xylose repressor from Anaerocellum thermophilum (score 542; E-value 5e-54; 32% identity in amino acids 5?381). It is very interesting that a protein with a high homology to the xylose repressor binds to the redD promoter region because antibiotic pro- duction is closely related to primary metabolism.

Regulated Gene Sigma Regulation Absolute position Location Binding seq.(cis-element) Experimental evidence
redD None ND ND ND ND Park SS, et al. (2009): DACA(DNA-affinity capture assay; mass spectrometry), GS, DB


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Contact: Yuko Makita