DBSCR - Transcription factor

   Database of transcriptional regulation in Streptomyces coelicolor

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Transcription factor: ScbR

Gene ID SCO6265 (link to ScoCyc)
Factor type ND
Pfam PF00440 (Bacterial regulatory proteins, tetR family )
Consensus seq. AACCGGNNNNNNGGTTTGT
Comment None
Link to Weight matrix & Motif alignment

Regulated Gene Sigma Regulation Absolute position Location Binding seq.(cis-element) Experimental evidence
scbA None Positive 6891206..6891250 -40:+5 AAGGATAGAAAAAAAACCGCTCAGTCTGTATCTTAACGTTCGCGC Takano E, et al. (2001): S1, GS, FT
scbR None Negative 6891333..6891373 -75:-35 CGCCATCGGAACCGGCAATGCGGTTTGTTCGATCGAGTTGG Takano E, et al. (2001): S1, GS, FT
kasO None Negative 6937937..6937986 -40:+10 GCTTTGACAAACCGGTGTGCTGGTTTGTAAAGTCGTGGCCAGGAGAATAC Takano E, et al. (2005): S1, GS, FT
kasO None Negative 6937727..6937762 -250:-215 GGGCCAAAACAGACTGTGTTAGCTGTTTCAGTCTCG Takano E, et al. (2005): S1, GS, FT
glnR None Negative ND ND ND Yang YH, et al. (2009): GS, RT-PCR




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Copyright: BASE, RIKEN
Contact: Yuko Makita