DBSCR - Transcription factor

Database of transcriptional regulation in Streptomyces coelicolor

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Gene ID	SCO6265 (link to ScoCyc)
Factor type	ND
Pfam	PF00440 (Bacterial regulatory proteins, tetR family )
Consensus seq.	AACCGGNNNNNNGGTTTGT
Comment	None
Link to	Weight matrix & Motif alignment

Regulated Gene	Sigma	Regulation	Absolute position	Location	Binding seq.(cis-element)	Experimental evidence
scbA	None	Positive	`6891206..6891250`	`-40:+5`	`AAGGATAGAAAAAAAACCGCTCAGTCTGTATCTTAACGTTCGCGC`	Takano E, et al. (2001): S1, GS, FT
scbR	None	Negative	`6891333..6891373`	`-75:-35`	`CGCCATCGGAACCGGCAATGCGGTTTGTTCGATCGAGTTGG`	Takano E, et al. (2001): S1, GS, FT
kasO	None	Negative	`6937937..6937986`	`-40:+10`	`GCTTTGACAAACCGGTGTGCTGGTTTGTAAAGTCGTGGCCAGGAGAATAC`	Takano E, et al. (2005): S1, GS, FT
kasO	None	Negative	`6937727..6937762`	`-250:-215`	`GGGCCAAAACAGACTGTGTTAGCTGTTTCAGTCTCG`	Takano E, et al. (2005): S1, GS, FT
glnR	None	Negative	ND	ND	ND	Yang YH, et al. (2009): GS, RT-PCR