DBSCR - Regulated genes

   Database of transcriptional regulation in Streptomyces coelicolor

Home
Transcription factors
Regulated genes
Revised TLS
Search
Contacts

Regulated gene: ccaR

Operon: No data
Genes Gene ID Synonyms Function
ccaR


Promoters

Binding
factor
Promoter
name
Regulation Location Binding seq.(cis-element) Experimental evidence Organism
CcaR - Positive -840:-815 GGAAAAACGTACCCCGGGGTCGGTTT Santamarta I, et al. (2002): RG, GS
Santamarta I, et al. (2005): HM, DP, GS
S. clavuligerus
Brp - Negative -840:-815 GGAAAAACGTACCCCGGGGTCGGTTT Santamarta I, et al. (2005): HM, DP, GS
S. clavuligerus
AreB - Negative -840:-815 GGAAAAACGTACCCCGGGGTCGGTTT Santamarta I, et al. (2005): HM, DP, GS
Santamarta I, et al. (2007): DB, GS, FT, HM, RT-PCR
S. clavuligerus

Comments:
CcaR CcaR protein is an activator controlling the expression of its own ccaR gene; The S. clavuligerus ARE sequence is located in the cmcH?ccaR intergenic region, 890 nt upstream of the ATG start codon of ccaR. This sequence is located upstream (not included) of the DNA fragment previously used as probe to test the autoregulation of ccaR by the CcaR protein.
Brp A brp gene, encoding a butyrolactone receptor protein, was cloned from S. clavuligerus. Sixty-one nucleotides upstream of brp another ARE sequence (ARE(brp)) was found, suggesting that Brp autoregulates its expression. Pure recombinant rBrp protein binds specifically to the ARE sequences present upstream of ccaR and brp.
AreB There are at least two (AreB and Brp) and possibly more regulatory proteins interacting with the upstream region of the specific regulatory gene ccaR (Santamarta et al., 2005). Only a very small increase on ccaR expression is observed in the Delta-areB mutant. A small molecule is required to restore rAreB binding ability.


Terminator

No Data




DBSCR:

Copyright: BASE, RIKEN
Contact: Yuko Makita