DBSCR - Transcription factor

   Database of transcriptional regulation in Streptomyces coelicolor
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List of Transcription Factors
The classification of factors below is based on the existence of the Pfam motifs (Sanger Center, UK). We manually selected Pfam domains that are functionally related to transcription factors. Since these motifs do not always correspond to DNA-binding domains, a factor can belong to multiple families.
Link to S. coelicolor and S. griseus

Helix turn helix family
GerE Bacterial regulatory proteins, luxR family
HTH_1 Bacterial regulatory helix-turn-helix protein, lysR family
HTH_AraC Bacterial regulatory helix-turn-helix proteins, AraC family
TetR_N Bacterial regulatory proteins, tetR family
Trans_reg_C Transcriptional regulatory protein, C terminal
Other family
BTAD Bacterial transcriptional activator domain
Not assigned
ND Not assigned to Pfam domains


Helix turn helix family

 Domain: GerE
Gene Other
family		 Functional
description		 Num. of
regulated genes
PikD
5
AveR
8
PimM
8
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 Domain: HTH_1
Gene Other
family		 Functional
description		 Num. of
regulated genes
BlaA
2
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 Domain: HTH_AraC
Gene Other
family		 Functional
description		 Num. of
regulated genes
AdpA
1
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 Domain: TetR_N
Gene Other
family		 Functional
description		 Num. of
regulated genes
JadR2
0
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 Domain: Trans_reg_C
Gene Other
family		 Functional
description		 Num. of
regulated genes
PolR BTAD2
SanG BTAD2
PimR BTAD1
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Other family

 Domain: BTAD
Gene Other
family		 Functional
description		 Num. of
regulated genes
PolR Trans_reg_C2
AfsR-sv
2
SanG Trans_reg_C2
PimR Trans_reg_C1
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Not assigned

 Domain: ND
Gene Other
family		 Functional
description		 Num. of
regulated genes
DnrN
1
DnrI
8
DnrO
2
PolY
1
JadR1
2
JadR
0
PhoP
3
PopR
1
ClgR
4
Unknown_sigma
unknown sigma factor49
LndYR
2
VlmE
1
VlmI
3
ArfA
1
RamR
1
XylR
1
Cpb1
1
SrrY
1
HrdB
2
FdmR1
9
CcaR
4
Brp
2
AlpV
1
AlpZ
4
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