DBSCR - Transcription factor

   Database of transcriptional regulation in Streptomyces coelicolor
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Transcription factor: SigB

Gene ID SCO0600 (link to ScoCyc)
Factor type Sigma70
Pfam PF04542 (Sigma-70 region 2 ) PF04539 (Sigma-70 region 3 ) PF04545 (Sigma-70, region 4 )
Consensus seq. ND
Comment SigB is a master regulator for osmotic stress response in S. coelicolor. Kim YJ, et al. 2008(PMID: 19087294) also suggested SigB is also strongly upregulated by the pH shock.
Link to Weight matrix & Motif alignment

Regulated Gene Absolute position Location Binding seq.(cis-element) Experimental evidence
catB 703990..704049 -50:+10 CGTTCCCCCGCGCCCATGCCTCGACTCCCGAAGGCTGGGTACGCGGTCACGGCCCACCAC Cho YH, et al. (2000): S1
sigB 639756..639815 -50:+10 AGTTGCGGCGCTCCGGCAGGTGTGCGGTGCTTGACCCGGGGTAGGCGATCGGTCGTCGGC Cho YH, et al. (2001): S1
rsbV 8132222..8132281 -50:+10 AACGGACCCGGCCGGCAGGTGTGGAGTCGGGATCCGGGGGTATCCGGGCGGCGCGGCGGA Lee EJ, et al. (2004): S1, DB
trxC 931209..931279 None TCATGGGGTCAGTCTGGTGGGTGGTGTGCGGCGTGGCCACATGGGTACGTGCGCGGAATACCCACCAGGTC Lee EJ, et al. (2004): HM, S1
sgaA 8154587..8154657 None GGGCACGGTCACCTCGGGGCCTCCGTTTCGGCGCCATGTGCGGGGTACTCGCCAGGCGCCCGCCGCACTCC Lee EJ, et al. (2004): HM, S1
SCO7277 8084821..8084891 None TGCCCGCACTGCGAAGAGACGTGGACTGCGACGCGCGACTCGGGGTACGAGGACAGGTGCAGCAGCGTCCG Lee EJ, et al. (2004): HM, S1
SCO7289 8094575..8094645 None CGGGCGAATCACCCGGACGACTGAGCATCTTGCCGGTGGGCGGGGTACTAGAGGGCTCTACGTCCGTCCTG Lee EJ, et al. (2004): HM, S1
SCO2372 2542775..2542845 None GCGCAGGCAGCACGTTCGAAGCAGGCATGACACGCCGTACGCGGGTACCCGAACTTCACGGAGAGTTCAGG Lee EJ, et al. (2004): HM, S1
sigB ND ND ND Lee EJ, et al. (2005): AR, DB
sigL ND ND ND Lee EJ, et al. (2005): AR, DB
sigM ND ND ND Lee EJ, et al. (2005): AR, DB
sigH 5705695..5705754 -50:+10 GACCTGTGCCCGGGACGGTTCGACCGTCTGACGTCTGGGTACGTCAACCCGGCGCGCGCT Lee EJ, et al. (2005): AR, DB
sigI ND ND ND Lee EJ, et al. (2005): AR, DB
hrdD ND ND ND Lee EJ, et al. (2005): AR, DB
rsbV ND ND ND Lee EJ, et al. (2005): AR, DB
SCO7277 ND ND ND Lee EJ, et al. (2005): AR, DB
catB ND ND ND Lee EJ, et al. (2005): AR, DB
mshA ND ND ND Lee EJ, et al. (2005): S1
mshC ND ND ND Lee EJ, et al. (2005): S1



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Contact: Yuko Makita