DBSCR - Transcription factor

Database of transcriptional regulation in Streptomyces coelicolor

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Gene ID	SCO5621 (link to ScoCyc)
Factor type	ND
Pfam	PF04539 (Sigma-70 region 3 ) PF04542 (Sigma-70 region 2 ) PF04545 (Sigma-70, region 4 )
Consensus seq.	ND
Comment	None
Link to	Weight matrix & Motif alignment

Regulated Gene	Absolute position	Location	Binding seq.(cis-element)	Experimental evidence
orfTH4	`3184473..3184532`	`-50:+10`	`TCGCCCTGGCGCTGCTGGTGGACTGGCTGGCGTCGCTGGCCGAACTGCTGCTGCGGCCGC`	Tan H, et al. (1993): S1 Tan H, et al. (1998): RO
orfTH270	`2752669..2752728`	`-50:+10`	`TCGGGGTTGTCGGGCTACGCGACGGGGGGCGGCGCCCGATGACGGCACCGGTGTTCGTGG`	Tan H, et al. (1993): S1
whiH	`6366295..6366356`	`-50:+10`	`GTGCTTTTCACCAAAGACCTCAAGGGAGTTGAGGTCGGCGCCGACAAAGGATGCGTGAGTAC`	Ryding NJ, et al. (1998): S1, DB
whiI	`6618905..6618964`	`-50:+10`	`CAGATCGTGATCATTCTCTAAAGGCGGACGCGTTCGGTGCCGAAGACGACTGTGACCTTG`	Ainsa JA, et al. (1999): S1, DB
ftsZ	ND	ND	ND	Flardh K, et al. (2000): S1
whiE-ORFI	ND	ND	ND	Kelemen GH, et al. (1998): DB (S1 protection)
whiE-ORFVIII	ND	ND	ND	Kelemen GH, et al. (1998): DB (S1 protection)
whiA	`2085745..2085804`	`-50:+10`	`CCCGCAGCGTCATTTGGAGGTTTTGGGACGACACGCCCCTAAACTCGCCCTGGACGTGGT`	Ainsa JA, et al. (2000): S1