DBSCR - Transcription factor

Database of transcriptional regulation in Streptomyces coelicolor

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Gene ID	SCO4180 (link to ScoCyc)
Factor type	ND
Pfam	PF01475 (Ferric uptake regulator family )
Consensus seq.	tTGCaa-N5-ttGCAA
Comment	None

Regulated Gene	Sigma	Regulation	Absolute position	Location	Binding seq.(cis-element)	Experimental evidence
sodF	None	Negative	`2860021..2860081`	`-30:+30`	`TTCCGAGCCTCTTGCTGCTAGCGTGCAGTTGCAAGGCTTTTGCAATAAGAGGCCGGAGGGG`	Chung HJ, et al. (1999): GS Ahn BE, et al. (2006): GS, S1, DB An YJ, et al. (2009): FT
nikA	None	Negative	`7135212..7135279`	`-65:+3(translation start site)`	`TGGCTTGACGCTTTATTGCGAGTGATGTGCAATAGCTGCGCATCGACAACAAGCGTGGGGGAGACATG`	Ahn BE, et al. (2006): GS, S1, DB An YJ, et al. (2009): FT
sodF2	None	Negative	`1055407..1055467`	`-30:+30`	`AGATGCCGTTCTTGCTGTTAGCGTGCAGCTGCATACAACACGCAATAACGTCGGAGGGCGT`	Ahn BE, et al. (2006): S1, DB An YJ, et al. (2009): FT
sodN	None	Positive	ND	ND	ND	Ahn BE, et al. (2006): S1, DB
nikM	None	Negative	`3461313..3461365`	`-50:+3(translation start site)`	`CTTTACCTCGCTCTTGCGAACGAGTTGCAACTGGTCTCTATCATCGAACCGTG`	An YJ, et al. (2009): FT