DBSCR - Transcription factor

Database of transcriptional regulation in Streptomyces coelicolor

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Gene ID	SCO3356 (link to ScoCyc)
Factor type	ECF sigma factor
Pfam	PF04542 (Sigma-70 region 2 ) PF08281 (Sigma-70, region 4 )
Consensus seq.	ND
Comment	None
Link to	Weight matrix & Motif alignment

Regulated Gene	Absolute position	Location	Binding seq.(cis-element)	Experimental evidence
dagA	`3832703..3832762`	`-50:+10`	`GCCACGTGGGCGTTCCGGAACTTTTTGCACGCACGCGAGCTCTCGAATTTTGGCGCCCAG`	Kang JG, et al. (1997): GS, RO Buttner MJ, et al. (1988): RO Fujii T, et al. (1996): RO Paget MS, et al. (1999): S1, DB Buttner MJ, et al. (1987): S1 Servin-Gonzalez L, et al. (1994): S1 Lonetto MA, et al. (1994): -
hrdD	`3511740..3511799`	`-50:+10`	`GTGACTCCGCGTCCGTGGCAACCCTCAGGCGGTACGGGCCGTCTTCAGGGTGGGAGAGCA`	Buttner MJ, et al. (1990): S1 Kang JG, et al. (1997): GS, RO Paget MS, et al. (1999): S1, DB
hrdD	`3511488..3511547`	`-50:+10`	`AATCGAGGGGCAGGTTGGGAATTCTGTCCGGATTCCAGTCGTTGTTTCCATCGGATGCAG`	Paget MS, et al. (1999): S1, DB
whiB	`3321239..3321298`	`-50:+10`	`CTTCGGCGCGTGTATCGGAACGGGATCGATCGCCGGGGCGTCCTTCCTGGTGCCGGTGCG`	Soliveri J, et al. (1992): S1 Kang JG, et al. (1997): GS, RO Soliveri J, et al. (1992): S1, RO
cwgA	`6783792..6783851`	`-50:+10`	`AAGGTCGCGAGCACACGCAACCTGGTCCCCGTTTTCGTCGTCTTCCTGGTCAGCGAAGGC`	Hong HJ, et al. (2002): S1, DB