Transcription factor: SigH
| Gene ID |
SCO5243 (link to ScoCyc) |
| Factor type |
Sigma70 |
| Pfam |
PF04542 (Sigma-70 region 2
)
PF04539 (Sigma-70 region 3
)
PF04545 (Sigma-70, region 4
)
|
| Consensus seq. |
ND |
| Comment |
Stress response sigma factor with a dual role in salt stress-response and morphological differentiation; sigH has two isoforms, sig52 and sig37 (Sevcikova J,et al. 2002). Kim YJ, et al. 2008(PMID: 19087294) also suggested sigH is also strongly upregulated by the pH shock. |
| Link to |
Weight matrix & Motif alignment
|
| ushX |
5705695..5705754 |
-50:+10 |
GACCTGTGCCCGGGACGGTTCGACCGTCTGACGTCTGGGTACGTCAACCCGGCGCGCGCT |
Kormanec J, et al. (2000): S1
Sevcikova B, et al. (2002): DB
Sevcikova B, et al. (2001): S1
|
| dagA |
3832749..3832808 |
-50:+10 |
ACTTACCTCCTGGAGCCTAGCTCCTCCTGCGCCGTGGAATGATCGTGCCACGTGGGCGTT |
Kang JG, et al. (1997): GS, RO
Buttner MJ, et al. (1988): RO
Fujii T, et al. (1996): RO
Buttner MJ, et al. (1987): S1
Servin-Gonzalez L, et al. (1994): S1
Viollier PH, et al. (2003): Western blots (Immunodetection of SigH isoforms)
|
| actIII |
5529583..5529642 |
-50:+10 |
GGTAAGGAGGGGTTGCGCGTGTTCGTCTGCGCGCGCGGCGAAGAAGGACTGCGGACGACG |
Kang JG, et al. (1997): GS, RO
|
| gltB |
2176734..2176793 |
-50:+10 |
GTAGCCGTTACTCGCTGGTTTCGAGCGCGTAATCTCCGGGCATGAGCCGTAAGCGCTGCG |
Kormanec J, et al. (2002): S1, DB
|
| ssgB |
1650275..1650334 |
-50:+10 |
GCAAAACACTCAGAGGGGTTTACAACGGCACCGTAGGTGGCATGTCGATTTCGCCGACGT |
Kormanec J, et al. (2002): S1, DB
|
| sigJ |
1346643..1346702 |
-50:+10 |
GAGGTGCGTATTCCGGTTTGCCGCTCCAGGGCCTCGGGTAGAAAATCCACATGGCCGAAC |
Mazurakova V, et al. (2006): S1, DB, RO
|
| ctc |
ND |
ND |
ND |
Viollier PH, et al. (2003): RO
|
|