DBSCR - Transcription factor

   Database of transcriptional regulation in Streptomyces griseus
Home
 Transcription factors
 Regulated genes
 Revised TLS
 Search
 Contacts

List of Transcription Factors
The classification of factors below is based on the existence of the Pfam motifs (Sanger Center, UK). We manually selected Pfam domains that are functionally related to transcription factors. Since these motifs do not always correspond to DNA-binding domains, a factor can belong to multiple families.
Link to S. coelicolor and other Streptomyces

Helix turn helix family
GerE Bacterial regulatory proteins, luxR family
HTH_3 Helix-turn-helix
HTH_AraC Bacterial regulatory helix-turn-helix proteins, AraC family
HTH_IclR IclR helix-turn-helix domain
LacI Bacterial regulatory proteins, lacI family
TetR_N Bacterial regulatory proteins, tetR family
Other family
BTAD Bacterial transcriptional activator domain
Sigma factors
Sigma70_r2 Sigma-70 region 2
Sigma70_r4_2 Sigma-70, region 4
Not assigned
ND Not assigned to Pfam domains


Helix turn helix family

 Domain: GerE
Gene Other
family		 Functional
description		 Num. of
regulated genes
AmfR
transcriptional regulator2
Go to top


 Domain: HTH_3
Gene Other
family		 Functional
description		 Num. of
regulated genes
BldD
putative transcriptional regulator1
Go to top


 Domain: HTH_AraC
Gene Other
family		 Functional
description		 Num. of
regulated genes
ArpA TetR_NA-factor receptor1
Go to top


 Domain: HTH_IclR
Gene Other
family		 Functional
description		 Num. of
regulated genes
SsfR
putative IclR-family transcriptional regulator1
Go to top


 Domain: LacI
Gene Other
family		 Functional
description		 Num. of
regulated genes
CebR
putative LacI-family transcriptional regulator8
Go to top


 Domain: TetR_N
Gene Other
family		 Functional
description		 Num. of
regulated genes
ArpA HTH_AraCA-factor receptor1
Go to top

Other family

 Domain: BTAD
Gene Other
family		 Functional
description		 Num. of
regulated genes
GriR
transcriptional regulator2
Go to top

Sigma factors

 Domain: Sigma70_r2
Gene Other
family		 Functional
description		 Num. of
regulated genes
AdsA Sigma70_r4_2RNA polymerase ECF-subfamily sigma factor1
Go to top


 Domain: Sigma70_r4_2
Gene Other
family		 Functional
description		 Num. of
regulated genes
AdsA Sigma70_r2RNA polymerase ECF-subfamily sigma factor1
Go to top

Not assigned

 Domain: ND
Gene Other
family		 Functional
description		 Num. of
regulated genes
AtrA-g
TetR-family transcriptional regulator1
AdpA
transcriptional regulator57
StrR
streptomycin biosynthesis operon regulator10
AdpB
trancsriptional regulator for A-factor regulatory cascade1
Unknown_sigma
unknown sigma factor41
Go to top