DBSCR - Transcription factor

   Database of transcriptional regulation in Streptomyces griseus
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Transcription factor: Unknown_sigma

Gene ID None (link to Genome Viewer)
Factor type ND
Pfam None
Consensus seq. ND
Comment None

Regulated Gene Sigma Regulation Absolute position Location Binding seq.(cis-element) Experimental evidence
adpA None Promoter 5574086..5574155 -50:+20 GACACCCCACCGCCCACCAGGCAGGAACGGACCGCGCGGTACGCTTTCACCCGACGCGGACGGGCCACGT Ohnishi Y, et al. (1999): S1
strR None Promoter 6939589..6939648 -50:+10 GACAGCTTTACTTGGCCGTTGCCCGGATGTCCGGGTGCTACTATTCGCGAAGTGCGAAAG Tomono A, et al. (2005): S1
sgiA None Promoter 634554..634623 -50:+20 AAGGCGGCCGTCGGCGTGCGCTTACTTTCCGCATGCGTAAGACTCCTGACCGCAATCAGGCATTCGACCA Hirano S, et al. (2006): S1
amfR None Promoter 2821998..2822057 -50:+10 GTTTGTCGGCGTACGCGAATGTCCATGCGCTCAACTGGATACCCGTCACCGGATGCGTAC Yamazaki H, et al. (2003): S1
amfR None Promoter 2821988..2822047 -50:+10 TATTCGGCCCGTTTGTCGGCGTACGCGAATGTCCATGCGCTCAACTGGATACCCGTCACC Yamazaki H, et al. (2003): S1
adsA None Promoter 4856798..4856857 -50:+10 TTAGACAACTGGGTGTAGCGCTGCCTGCACGAAGCGTTATTCTCCTCAGACGCATCACGG Yamazaki H, et al. (2000): S1
sgmA None Promoter 2482242..2482301 -50:+10 TGTTGACGCGCTCCTGACAGGTGCGGTCATCTGCTGACACTCTTCACCCCGTTCTGCGCA Kato JY, et al. (2002): S1
amfT None Promoter 2829479..2829538 -50:+10 TGACAACAGTGACTATGGGCACCGCTCATCGTTATGACAATTTCTCTCTCGCCGCGAAAG Ueda K, et al. (2005): S1
sprA None Promoter 404683..404742 -50:+10 CGGGCGCGAATCCGGCCTTGCGTCAGGGACGGTCCCCGTCAACGATTCCAGCGTGCAACT Tomono A, et al. (2005): S1
sprB None Promoter 6749546..6749603 -50:+10 GAAAGGCATTCTTGCGTCCCCCGTCCGGCCCCCTCGATACTCCGGTCAGCGATTGTCA Tomono A, et al. (2005): S1
sprD None Promoter 6762832..6762891 -50:+10 CGTCTGGAAGTCGACCTTGTGTGCGTTTCGCGGCGTCGGAATAGTGGGCGCCCCATCCTC Tomono A, et al. (2005): S1
sprT None Promoter 1465592..1465651 -50:+10 CCGAAATGTGCGCCTTGTGGCAGCGGCCACCCGTTCCCGACAATCGCAGCATCTTGACGG Kato JY, et al. (2005): S1
sprU None Promoter 6467120..6467184 -50:+10 GCCGAAAAGTGCACCTTGTGGCAGCGGTCACGCGGCACCGATAATCGGAGTGTTCTTGTCGAGTA Kato JY, et al. (2005): S1
ornA None Promoter 5572606..5572665 -50:+10 CCGGGCGCCCGGCCCTGCCGGGACAGCGGAGTGCCCCGTAGGGTGGGGCGCATGAACGAC Ohnishi Y, et al. (2000): S1
SGR_1350 None Promoter 1582185..1582244 -50:+10 GGACCTCCCGGATTTACCGGTAGATCAGCTGCATGACTTCTTCCCCCTCCTCCGTCCCCG Akanuma G, et al. (2009): S1
SGR_1503 None Promoter 1759556..1759615 -50:+10 AGGGGCCTCGCGGCAACACCCTTGACACGTCCAGCCACTTGGCTCCCTACTGGACCTTGC Akanuma G, et al. (2009): S1
SGR_1542 None Promoter 1812766..1812825 -50:+10 GAACTGCGGTGACACTTCGCCGCAGAACGCCTTAATTCAGATATGTCGGTGACCATCGCC Akanuma G, et al. (2009): S1
SGR_2418 None Promoter 2855713..2855772 -50:+10 AGACCCTTTAAGTGTGGTTTACAGCCCGGCCGTACTCAATAGTTGGCTCCATTGAGCTCG Akanuma G, et al. (2009): S1
melC1-2 None Promoter 2884722..2884781 -50:+10 CCCTTTTCACCTCCTTATGCGGAGACAAACCCCCGTGTACACATGATCACGGCGGCCCCG Akanuma G, et al. (2009): S1
SGR_2648 None Promoter 3128328..3128387 -50:+10 CATTCCGCGCCTCGCGTGAACCAACTCTCCCGGCATCACCTCTAGTTCGGTGAACCGACG Akanuma G, et al. (2009): S1
SGR_3532 None Promoter 4131147..4131206 -50:+10 ACTCGCTAGCTTTCGCAGCACATTTGTTCAGCCGTTCAGGTGCTGAGCCGCTCGGAGCGC Akanuma G, et al. (2009): S1
SGR_3840 None Promoter 4499012..4499071 -50:+10 CCGGGTGAGTACAGACAACCTGCGGACCCCCGTGCCGCCTCTCACAGGCCGGACACAGCG Akanuma G, et al. (2009): S1
SGR_5809 None Promoter 6804390..6804449 -50:+10 CCGGTTTCCGCTCTTGACGGAGCACTGTCATTTCCTTGAGCATCGGTCACGCATTGCGCA Akanuma G, et al. (2009): S1
SGR_5973 None Promoter 6986303..6986362 -50:+10 TTGGCCGAGGAGCCGTCCTCTCGTACGCCTCCCAGCCTACGATCGGGCCTCGCTCGACCG Akanuma G, et al. (2009): S1
SGR_6809 None Promoter 8190890..8190949 -50:+10 TACCGACCAGACGGTTGACAGCTCCCGCGGCTCCCTGGCTGAGTGTCGCGTGGCTGTCCG Akanuma G, et al. (2009): S1
adpA None Promoter 5574096..5574155 -50:+10 GACACCCCACCGCCCACCAGGCAGGAACGGACCGCGCGGTACGCTTTCACCCGACGCGGA Kato JY, et al. (2005): S1
atrA-g None Promoter 4585361..4585420 -50:+10 TGCGGAACTACCCCCTTCTGAATTGACGCGGGCTCAACTATGTTCGTAACCCGTCGGGGT Hirano S, et al. (2008): S1
strR None Promoter 6939589..6939648 -50:+10 GACAGCTTTACTTGGCCGTTGCCCGGATGTCCGGGTGCTACTATTCGCGAAGTGCGAAAG Distler J, et al. (1987): S1
Vujaklija D, et al. (1995): S1
aphD None Promoter 6940515..6940574 -50:+10 CCCGTCCGTGCGGCTCACCGAGGACGGTCGGGCGCTGCTACGTTGGCTGAACGTGGTGGC Distler J, et al. (1987): S1
strB1 None Promoter 6942045..6942104 -50:+10 CGCCGCGGTGGACATATGCCCGAGCGAAGCGGCGCTGCTAGCCTGCGATGAGTACGGGAG Distler J, et al. (1987): S1
strD None Promoter 6939478..6939537 -50:+10 TCCTCCAGGGCGGAGAGGACCGGAACGGCCCCCTCCAGCCAGCGCCTGCGCCCGATCACG Vujaklija D, et al. (1993): S1
griC None Promoter 4963260..4963319 -50:+10 GACACCCGGGCGATACGTGGCCGATAGGCCCCGCCCGCACGATGGGTGCCGTACCGCCCT Higashi T, et al. (2007): S1
griJ None Promoter 4972118..4972170 -50:+10 CGCCGGTGCGACGGAGAGACGGCCCCGATATCCCCCTCCTGGAAGCTCGTCGC Higashi T, et al. (2007): S1
griT None Promoter 4958362..4958421 -50:+10 CCCTCAGACAGGGGGTTGGAGCGGGACGACGGGACTGTCACAGTCGGGGGATGACCGGTT Higashi T, et al. (2007): S1
griS None Promoter 4958463..4958522 -50:+10 CCTTGATTGCGGGATGGGAACCGCGCCCGTATCCCGCAAGTGTGCCGTTCATGCGGATTG Higashi T, et al. (2007): S1
griR None Promoter 4958748..4958807 -50:+10 CCCGGCTGCACGCCGGTCTGCTGGCCGGCAAGGCGGTCGTGGACCTGAGCGTTCCCTCGC Higashi T, et al. (2007): S1
griR None Promoter 4958793..4958852 -50:+10 TGAGCGTTCCCTCGCGGACCGACCCGGCGTCGAGCGCGGTCCGCCAACTGGTCGGTCTCG Higashi T, et al. (2007): S1
griA None Promoter 4960235..4960294 -50:+10 CCTAAGCAGGGGATGGGAGACGCCCCGCCGGACGAGAACACTGCTCCTCATCGCCGCCGC Higashi T, et al. (2007): S1
cebE None Promoter 5564460..5564519 -50:+10 ATCGTCTTCAACTCTTGACACCCACCCCCTTCAGGCAGCAACCTTCCGGCAACGGCGCAT Marushima K, et al. (2009): S1
cebR None Promoter 5569639..5569698 -50:+10 CCACCGCCTTTCCGTCCCCTTCTTGGGAGCGCTCCCAATACACTGTCCGTACGCTCGTCG Marushima K, et al. (2009): S1
cebR None Promoter 5569702..5569761 -50:+10 TGATCGGTCCAGGACTTGGATTGACTGTACGGCTGTGAGAAATTGACCGGGAACGGGGAG Marushima K, et al. (2009): S1
sasR None Promoter 5215011..5215070 -50:+10 CCTACCCCCTGCATATGGACATACAGCGACCTTCCTGGCTGAATAGAACGGTCGGCGCCG Takano H,et al. (2008): S1
sasA None Promoter 5218470..5218529 -50:+10 GAAAATGCCAGAACCCCCACCGGCCGTGAGCACGATGCGTAGCCTCAGCGTTACAGCCGT Takano H,et al. (2008): S1
SGR_2391 None Promoter 2819882..2819941 -50:+10 GGAAGTCAGCATTACCCCCGCTGACGTGGGCAAACGCGTGTCCGTTCGCCGCCGGACGGA Ueda K, et al. (1998): S1
rarA None Promoter 1253097..1253156 -50:+10 GTTGGGTGAATATGCCGAAGCACTGTTCTGATCTGGCTAAGCTCACGCGCAGTGAAGTCG Komatsu M, et al. (2003): S1
hrdB None Promoter 2007565..2007624 -50:+10 GCCACGCGGATTGGCCGTAACACTCCTCGAAGCAGCGCGATGACTTAAGAGGTGAGCGTC Shinkawa H, et al. (1995): PE



DBSCR:

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Contact: Yuko Makita