DBSCR - Transcription factor

Database of transcriptional regulation in Streptomyces

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Transcription factor: Unknown_sigma

GenBank ID	no data
Factor type	ND
Pfam	None
Consensus seq.	ND
Comment	None

Regulated Gene	Sigma	Regulation	Location	Binding seq.(cis-element)	Experimental evidence	Organism
dnrI	None	Promoter	`-50:+10`	`AAGTGCCGTACACACTTTCATGGCGGGCATTCACTTGCGAGGATGGAGCGAGCAAACGGG`	Madduri K, et al. (1995): PE	S. peucetius
drrC	None	Promoter	`-50:+10`	`TCCTGGTCAGGAACGCGCCGCGAGCTCTGGTGACATCTCTGGCCTTGCTCGGCGGAAACA`	Lomovskaya N, et al. (1996): PE	S. peucetius
dnrD	None	Promoter	`-50:+10`	`GTCCCGGAAACACTTGTACGCCGCCGCAGGGAGAAACAACAATTGTTGACGCGGTCGCCG`	Madduri K, et al. (1995): S1	S. peucetius
dnrG	None	Promoter	`-50:+10`	`GACGACCCGGCTTCCAGAGGGGGTCGAGCGGCGCCGCAGAGCCTCGGAGTCCGGCGTGAC`	Tang L, et al. (1996): PE	S. peucetius
dpsE	None	Promoter	`-50:+10`	`GAAGCCGGGTCGTCAAGCGCGGCTCGAGCGCGAGATGTGAGGGTGGGCCCTCCGTCGAAG`	Tang L, et al. (1996): PE	S. peucetius
dnrO	None	Promoter	`-50:+10`	`AGACGGCGGGAATCGCGGCCATAGAGTGACCGCGATTCGTGCCACCCTGGAAGCATGACC`	Otten SL, et al. (2000): PE	S. peucetius
dnrO	None	Promoter	`-50:+10`	`ATCGCGATTAGCGGATTCCGTGCAGCAATAGGGTCGGGGTGGCGCAGCGATCAGTCCTCGC`	Otten SL, et al. (2000): PE	S. peucetius
dnrN	None	Promoter	`-50:+10`	`CACACAGGCACCCATAGCCACTACCTGAATCACCTCTTATAGTCGTACGCAAGCTCGGTT`	Otten SL, et al. (2000): PE	S. peucetius
sgiA	None	Promoter	`-50:+1`	`TGCATGGGGTCGAGGTGAGTTTCCGCCGGGGACTCGGCAGACTCCGGCACG`	Hirano S, et al. (2006): ND	S. albogriseolus S-3253
sgiA	None	Promoter	`-50:+1`	`TCGACCATCCCGGATGGCACTCACTCTCCGCACCGGCAAGACTCCTCACCGC`	Hirano S, et al. (2006): ND	S. venezuelae
polY	None	Promoter	`-50:+10`	`ACTTGGCGGCCACGGCCTGCCGGAGAGCCTGCCACATACACTCTGATCAGCGCATTTCAG`	Li R,et al. (2010): S1	S. cacaoi
polR	None	Promoter	`-50:+10`	`GTCAGTGCAACGTCACTCTTTCCGCACAGGGGCATGTGTAGCCTGCTCGCCGCACGTACT`	Li R,et al. (2009): S1	S. cacaoi
polC	None	Promoter	`-43:+1`	`GGGCGAGAGATCGGCAAGGCACCCGGCGCAGACTCCTGGATCAC...99bp...gtg`	Li R,et al. (2009): S1	S. cacaoi
polB	None	Promoter	`-43:+1`	`GGGCAAGGACCCGGCAGGAAGGCGGCCCCACACTCGTCGGCATT...58bp...atg`	Li R,et al. (2009): S1	S. cacaoi
blaA	None	Promoter	`-50:+10`	`GGAAACGGAATACATGCCTGCTGGGAGCGGCTCCGCTTACAGTCGGGGCCATGGACGTGG`	Urabe H, et al. (1992): S1	S. cacaoi
jadJ	None	Positive	`-50:+10`	`CCCTGAATCGGTGAGTCTTGAACGAAGTCCTGGACCGGAACAAGCTTGTCGTGAAGGTCC`	Wang L, et al. (2009): S1	S. venezuelae
jadR1	None	Positive	`-50:+10`	`GGTAGAGAAATGACCTTGACAAACCGGCGCACGGGTTTGTAGCGTTCCCGTTGGCGGGAT`	Wang L, et al. (2009): S1	S. venezuelae
strV	None	Promoter	`-50:+10`	`CGAACGGCTCCTGGTTGACGCACCGTCCGCCGGGCTCGTATCATTGCGCAATGCGCCCGT`	Beyer S, et al. (1996): PE	S. glaucescens
ppk	None	Promoter	`-50:+10`	`CCAGAGGCTCCCCGCTATCCCACACGTCATGTCCCCGTAACCATCGATTCAGACAGCCTT`	Chouayekh H, et al. (2002): PE	S. lividans
phoR	None	Promoter	`-50:+10`	`CGCACCCGGATGGCTGGGGCCGGACGGTTCGCCGTGCCTAACCTGGAGACATGFACGTGA`	Ghorbel S, et al. (2006): S1	S. lividans
phoU	None	Promoter	`-50:+10`	`AGCCAGGGACGGTTCATTTGGGGTGCCGGAAACGGACGCGTACAGGCCGGAACCGTGTAA`	Ghorbel S, et al. (2006): S1	S. lividans
phoP	None	Promoter	`-50:+10`	`GAGACCGAGCGGTCGTCCTCAGCCCCGCAATCCCCCCATACAGCCCCGTTCGAAACGTT`	Ghorbel S, et al. (2006): S1	S. lividans
clpP3	None	Promoter	`-50:+10`	`CGCGGGCAGAGAAGTCCCCTGTCCGGGCCCCGGCGGGCCGAGAGTGGAAAAACCGCGGCG`	Viala J, et al. (2000): PE	S. lividans
clpP1	None	Promoter	`-50:+3`	`CCCGCAGAACCGGGATGGCACCGGAGGGTCACCGCGTTAGGGTCCATGAATAC`	Bellier A, et al. (2004): PE	S. lividans
clpC1	None	Promoter	`-50:+3`	`GTCGGCAGTTGGAATGAGCGGTCCCCGCTTGCGGGACTAAGCTGCGGAAGGAC`	Bellier A, et al. (2004): PE	S. lividans
lon	None	Promoter	`-50:+10`	`ACAGCGAACAGGGCTTTGGGGAACAATCCCGGGCTCCCTTTCATTGAGTCGATGTAACTCA`	Bellier A, et al. (2004): PE	S. lividans
clgR	None	Promoter	`-50:+7`	`CACGACATCGCTCCCCGCACGGCCGCGGCGCGAGGCGGTACGGTGGGGCGTGAAGGA`	Bellier A, et al. (2004): PE	S. lividans
ramR	None	Promoter	`-50:+10`	`ACGTGCGTACGTGTCGTGTTCCGCCGTCCCGGATGGGGGCACATGGCCCGAGGGCGCGGG`	Keijser BJ, et al. (2002): RG, S1, DB, OV	S. lividans
sanG-P1	None	Promoter	`-50:+10`	`CAGACCGCACCCATTTCCCCCCTCCCACCCCCGAGGGGAAGAGGACACGCAAGGCAACCA`	Liu G, et al. (2005): S1	S. ansochromogenes
sanG-P2	None	Promoter	`-50:+10`	`AATGGAAACATCAGCCGACTCACCACAGCCGACCCGACCGTCCGTGCCGCAGACCGCACC`	Liu G, et al. (2005): S1	S. ansochromogenes
sanG-P3	None	Promoter	`-50:+10`	`GCTCATTCGCGTTCGCCCAGCTCAGGAGAATGCTCGATACACTGATTCCGGCGAGGCATA`	Liu G, et al. (2005): S1	S. ansochromogenes
sanO	None	Promoter	`-50:+10`	`GCGGGCGGGGCAAGCGAGGCGGCGAGGTCCTTGCAGGGACGCGGCGACATGCTGTGCGGGC`	Liu G, et al. (2005): DB He X, et al. (2010): GS, FT, SDM Wang G, et al. (2003): PE	S. ansochromogenes
sanN	None	Promoter	`-50:+10`	`GTCAGTGCACGGCAAGCCGTCGGCAAGGGCCCCAGCTCCAGGCTGGGCCGCGTAGGGACCA`	Liu G, et al. (2005): DB He X, et al. (2010): GS, FT, SDM Ling HB, et al. (2008): PE	S. ansochromogenes
chiA	None	Promoter	`-50:+10`	`CCGTACCTACCTCTTGACACCTTCAATTGGTCTGGACCACCTTGTACGTCAGCGGTGGCC`	Fujii T, et al. (2005): HM	S. lividans
srrZ	None	Promoter	`-50:+10`	`ACGGCGGTGGAGATACCGGAGCCGGACGGGAGAACGCGGCTACGGTGCAGACGCGCCGGTG`	Suzuki T, et al. (2010): HM, S1	S. rochei
fdmC	None	Promoter	`-50:+10`	`CGTGCCGTGGCCTCTTCGAGCCTGCCTCGAGGCGGCTGGACGATGCTCACGCCCGGCCGG`	Chen Y, et al. (2008): DB, OV, HM, RT-PCR	S. griseus ATCC 49344
fdmD	None	Promoter	`-50:+10`	`GACGTCGAGCTGGCCTGGACCGGCCCTCAAGCCGCCCGGGCCAGCATCACGTCCCGACAG`	Chen Y, et al. (2008): DB, OV, HM, RT-PCR	S. griseus ATCC 49344
fdmM	None	Promoter	`-50:+10`	`CCCGTCGAGCGCCGCTCCACAGCGAATCGAGCAGGCGGCGCCAGGGTGGCGGCACCACCC`	Chen Y, et al. (2008): DB, OV, HM, RT-PCR	S. griseus ATCC 49344
fdmM1	None	Promoter	`-50:+10`	`ATCATCGAGCCGTCTTCGAGGCCGTTTCGACCACCGGGGCCGAAGGTCGGGGCCGGAGGC`	Chen Y, et al. (2008): DB, OV, HM, RT-PCR	S. griseus ATCC 49344
fdmT1	None	Promoter	`-50:+10`	`CGCGTCCACCGGCCTTCAAGTGAGTTTCGAGCCCTCCCCCTGAGGCTGACCGCGTCAGAA`	Chen Y, et al. (2008): DB, OV, HM, RT-PCR	S. griseus ATCC 49344
fdmV	None	Promoter	`-50:+10`	`ACCATCCAGCGCCCCTCCACGCGGTTTCGAGCGGTGCGGGAAACGCTGGACGCCGACGGC`	Chen Y, et al. (2008): DB, OV, HM, RT-PCR	S. griseus ATCC 49344
fdmR1	None	Promoter	`-50:+10`	`CTTGTCGAGTACCGCTCAAGCAGAAGTCAAGTAATCGCCCGCACGCTCACGAAGCGCATC`	Chen Y, et al. (2008): DB, OV, HM, RT-PCR	S. griseus ATCC 49344
fdmW	None	Promoter	`-50:+10`	`CGGCTCCGGCGCTGTTCGAGCCGGCGTCGAGCCGCCGGTGCGAGCCTGCCCGTATGCAAC`	Chen Y, et al. (2008): DB, OV, HM, RT-PCR	S. griseus ATCC 49344
fdmR2	None	Promoter	`-50:+10`	`GCCTTCCAGCCGTTCACCAGCGTCCCTCGAGTCGGCGCGGGCACCGTGGGCGGCACGGGG`	Chen Y, et al. (2008): DB, OV, HM, RT-PCR	S. griseus ATCC 49344
lat	None	Promoter	`-50:+10`	`CGTCCGAGAGAGCTGGAAGAGGGGTCCAAGAGCATGGTGGGTCATTATTGTGATCCTAAA`	Kyung YS, et al. (2001): HM	S. clavuligerus
areB	None	Promoter	`-50:+10`	`CGGGTTCTCCGGAACTTTGAACTTGCGTTTCACACTGTGAGACGCAAGTATCGTTGCATG`	Santamarta I, et al. (2007): S1, PE, DB, GS, FT, HM, RT-PCR	S. clavuligerus
pimK	None	Promoter	`-50:+10`	`ACGGGGCCAAGTCTAAGGATTTCCCGACGCCCGCCGTGACATCAAAGGGAGGTGCGACCG`	Santos-Aberturas J, et al. (2011): HM, RACE	S. natalensis
pimA	None	Promoter	`-50:+10`	`TCCGCCGGGATCTAGGGGTTTTCCGGTGTGCGGTGCGCTGCACTGTCCGGGTGCTGCTAT`	Santos-Aberturas J, et al. (2011): HM, RACE	S. natalensis
pimE	None	Promoter	`-50:+10`	`CCGCGTACCTCTGGCATTTCCCCCAGTCTTTCCTGACCAGGATTACCGGCATGTTCGAGA`	Santos-Aberturas J, et al. (2011): HM, RACE	S. natalensis
pimJ	None	Promoter	`-50:+10`	`GTGTGCCCGGAATTTCTTGACATCATGACCGGCCGCTTGGAAGCGTGCGAGGACCCAGCG`	Santos-Aberturas J, et al. (2011): HM, RACE	S. natalensis
pimI	None	Promoter	`-50:+10`	`GGCGCGGATACTAGGTGTTTTCCGGCATTCCTCCTTGTCGAATGGGCGTGTGAATACCGG`	Santos-Aberturas J, et al. (2011): HM, RACE	S. natalensis
pimS2	None	Promoter	`-50:+10`	`TGTGAGGAATCTAGGGAATTCCATGACAAACACCGTCGAAACTGGGCGAGTGGCGTGCGG`	Santos-Aberturas J, et al. (2011): HM, RACE	S. natalensis
pimD	None	Promoter	`-50:+10`	`CGAGCCATGTGTAGGGATTTCCTGGTCCGGAGACGGCTAGCGTCACCCCTCACCCGTCAT`	Santos-Aberturas J, et al. (2011): HM, RACE	S. natalensis
pimS1	None	Promoter	`-50:+10`	`GCAGCATCAACTAGGGAAACCCGCAGTCCACCTGACGAAGGATGGCGGGGAAACGGTCGG`	Santos-Aberturas J, et al. (2011): HM, RACE	S. natalensis

DBSCR - Transcription factor

Database of transcriptional regulation in Streptomyces

Transcription factor: Unknown_sigma

DBSCR: