DBSCR - Transcription factor

   Database of transcriptional regulation in Streptomyces coelicolor
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Transcription factor: HrdB

Gene ID SCO5820 (link to ScoCyc)
Factor type Sigma70
Pfam PF00140 ( Sigma-70 factor, region 1.2 ) PF04539 (Sigma-70 region 3 ) PF04542 (Sigma-70 region 2 ) PF04545 (Sigma-70, region 4 )
Consensus seq. TTGAC-N16to18bp-TAGART
Comment None
Link to Weight matrix & Motif alignment

Regulated Gene Sigma Regulation Absolute position Location Binding seq.(cis-element) Experimental evidence
ohrA None Promoter 3257016..3257075 -50:+10 TGTGTGCAATTTAGTTGCGCGCGATCAAATGGCGTGCTCTACTTGGGGCTGTCAGGCACA Oh SY, et al (2007): S1
ohrR None Promoter 3257068..3257127 -50:+10 TGCACACAACTAAATCGCGGACAAGGCCAGTCGGCTACCCTGGAGCGCATGACCACGCCC Oh SY, et al (2007): S1
catR None Promoter 5667351..5667410 -50:+10 AAATCACACCCATTCGGGACCTGGTCCCCCTTGCTGTTAGGCTGATGTGTATGAGTGACC Hahn JS, et al. (2000): S1
catR None Promoter 5667425..5667484 -50:+10 GCACGAACCGCGCCTCTTGGCCAATGCCGCCCCGGTTCCTACAATGGACAGTGTCTAATT Hahn JS, et al. (2000): S1
catA None Promoter 393421..393480 -50:+10 GCTCTAGATGCCGCCTTGCCTTAGATCCTGTCCAAGGTAGGGTGGTGGCTGCGAAGAACC Hahn JS, et al. (2000): S1
agl3R None Promoter 7964711..7964770 -50:+10 TCAAGAGTCTGCAACCCACAGACACACGATCATCGATAAGATGCGAAGACGTTCTACGAA Hillerich B, et al. (2006): S1
agl3E None Promoter 7964653..7964712 -50:+10 GACAACCGCGTAACAGGAGTCATCATATCGCCTATCGATAGAACATAATCGATAGGGAGG Hillerich B, et al. (2006): S1
dagA None Promoter 3832843..3832902 -50:+10 GCAGCCGTACCGATTGTCACCCTGCGACACTCCGCTGTAGCATTCGGGAAACCGGTTCAC Kang JG, et al. (1997): GS, RO
Buttner MJ, et al. (1988): RO
Fujii T, et al. (1996): RO
Buttner MJ, et al. (1987): S1
Servin-Gonzalez L, et al. (1994): S1
Brown KL, et al. (1992): RO, SDS-PAGE
sigN None Promoter 4431732..4431791 -50:+10 GATGTCGACATGTCACTACAGCGCGTTGCCGACATGTGACATTCTGCCGGAGACGCGTTT Dalton KA, et al. (2007): S1, HM
rrnD None Promoter 3302221..3302280 -50:+10 GTTCCCGCAAGAGCCGTTGACACGGAGCGAGCGGGGAGGTAGATTCGAACAGTTGCCTGG Baylis HA, et al. (1988): S1, in vitro transcription assay
Kang JG, et al. (1997): GS, RO
Hahn MY, et al. (2007): S1, in vitro transcription assay
bldD None Promoter 1592266..1592325 -50:+10 GTGCGGACCATTCGGCTTGACGCAGCAGAGTAACGCTGCGTAACCTCACAGTGAGTTACC Elliot M, et al. (1998): S1, HM
Elliot MA, et al. (1999): -
bdtA None Promoter 3680331..3680391 -50:+10 GATGGGTGCACCTCTTCCCCATTCGCATCACCCGCCCCTACATTGGGGAGTGAGCACGCAG Elliot MA, et al. (2003): S1, HM
furA None Promoter 603831..603890 -50:+10 GTCGTTCGTTTCCTTGAGCCGTTCGTGTCCCAGGGAGTAGGTTCGCCGCCATGACGGCAT Hahn JS, et al. (2000): S1
scbA None Promoter 6891196..6891255 -50:+10 CTCCCCCGGGAAGGATAGAAAAAAAACCGCTCAGTCTGTATCTTAACGTTCGCGCATACA Takano E, et al. (2001): S1
scbR None Promoter 6891290..6891349 -50:+10 TTGTTCGATCGAGTTGGCATCGGACGCAGAATTGATCAAAACTACTGCTTCGGGCATGGG Takano E, et al. (2001): S1
kasO None Promoter 6937927..6937986 -50:+10 AACGGTCTCTGCTTTGACAAACCGGTGTGCTGGTTTGTAAAGTCGTGGCCAGGAGAATAC Takano E, et al. (2005): S1
ssgA None Promoter 4319370..4319429 -50:+10 CTGAAAACTCACTCCTTGTGATCTGGTGTGTACGTTGAGCAAGATGCCATCAGTGTTAGA Traag BA, et al. (2004): S1, GS
glcP1 None Promoter 6078446..6078505 -50:+10 TCACAGCTCTCGCCCTCTTGACTTCGATACTTGAAGGCATAGTCTCTGCAACGTTGCTTT van Wezel GP, et al. (2005): S1
afsS None Promoter 4842708..4842767 -50:+10 GTAGCCGGAGCGTTCAGCGTTCGTTTATCTCCCCCTGGCACTGTCATCTCCGTCAGACCG Lee PC, et al. (2002): S1
Tanaka A, et al. (2007): S1
absA1 None Promoter 3536903..3536962 -50:+10 CGGCAGATCCGGCGGCCGGGGCCGCTCTTGTAGCGTGCTGGAATGCACCGATGGCAGGCC Anderson TB, et al. (2001): S1, HM
ftsZ None Promoter 2235774..2235833 -50:+10 GGTTCGGCGTGTTCGTTGAACGTGCGCCACTTGTCGACTTAGTGTCCTGTTCGGAAGAGT Flardh K, et al. (2000): S1
vdh None Promoter 4483802..4483861 -50:+10 TCCTGAGCACTGTGCGGCGGGCCGGTACACCCAGGCTCTAATCTCGTGCCACAGTCCCCG Tang L, et al. (1995): PE
glnII None Promoter 2374189..2374248 -50:+10 GTTCACCTACGGGCAACGGTCGGGAAATCGCCCGTTGGCACGCTGCACGGCAGTAGACGC Weisschuh N, et al. (2000): S1
phoA None Promoter 2457865..2457924 -50:+10 CCGGAACTCATCCGTCCGACACGTGATCGCCATGTCCGTGCCAAACCGGGGTCGTTCCCG Apel AK, et al. (2007): PE, HM
phoC None Promoter 875764..875823 -50:+10 CCTGCCCGTTCAGGGCGTTTTGTCTGCTTAACATGCGGGGTCCGCGCATCGCCCCGCTGT Apel AK, et al. (2007): PE
phoC None Promoter 875739..875798 -50:+10 CCTCCTGTGTGATCACTCCGCAAGCCCTGCCCGTTCAGGGCGTTTTGTCTGCTTAACATG Apel AK, et al. (2007): PE
phoD None Promoter 2218495..2218554 -50:+10 TTTGCGAGTTCGCCCACTCGCGCGCGTACCGATCAGTAACCTGATCGGCCGTGACCAGTC Apel AK, et al. (2007): PE
redD None Promoter 6432548..6432607 -50:+10 AATCCGATCGTTCGGTGGATGACGGGTGGGGGAGTGCTTGCCACGATGGACCCGGTTCGA Fujii T, et al. (1996): DB, SDS-PAGE
Aigle B, et al. (2000): SDM
actII-ORF4 None Promoter 5528013..5528072 -50:+10 TGACGGCAAGCACATTGAAATCTGTTGAGTAGGCCTGTTATTGTCGCCCCCAGGAGACGG Fujii T, et al. (1996): DB, PAGE
Aigle B, et al. (2000): SDM
crgA None Promoter 4239169..4239228 -50:+10 AATTGCTCAACGTACCCTTATCTCCTTCGGCGCCACGGAAGGACTACGCTAACGGACGCC Del Sol R, et al. (2006): S1
pqrA None Promoter 1679220..1679279 -50:+10 CGCACACCCAGAGTGAGACAAAATTGTCTCATGTGGGTTATTGTTGTCTCATGGCCGTTG Cho YH, et al. (2003): S1
malR None Promoter 2400601..2400660 -50:+10 GGCGCCCGATCGGTGTGCAAGGGAGCGGCCGACAGGTACAGTCCACCCCTGTGACCACAC van Wezel GP, et al. (1997): S1
xdhA None Promoter 1193220..1193279 -50:+10 GGCCCCCCACCCCTGCACCCACCGCCTACAGCCAGTTTTCCCGGTATCCAGACACCAAAG Hillerich B, et al. (2008): PE
xdhR None Promoter 1193329..1193388 -50:+10 GGAAAACGTAACGGACAGTTGTCCGCTTAGCAAGGTCGGGATTCGGCCACGAACCCGAAA Hillerich B, et al. (2008): PE
SC7A1.14 None Promoter 6069006..6069065 -50:+10 CTGCCGGGCCGGATTGGGCCGAGAGCGAATGGTCCAGTATCCTGGCTCTTCGGTCGCGTG Sello JK, et al (2008): S1
rrnA None Promoter 4530022..4530081 -50:+10 TTGACAGCGACGCTTGACAGCCCTCTGCGGGATCCGTAAGGTTCTTCGGGTTGCCACGGG Van Wezel GP,et al. (1994): PE,RO
osaB None Promoter 6285095..6285155 -50:+10 ACATCACGGTGACAGGGTGTGGCGACAGGCGGGGTGCGGCTACGATGACCGGCACAAGGAC Bishop A, et al. (2004): S1
tuf3 None Promoter 1397601..1397660 -50:+10 TCCATAAAAAACCATTCGACGTGCGACGAAGCGTCGGCGATGATCTGTCTCATGTTCCGG van Wezel GP, et al. (1995): S1, RO
pkaG None Promoter 4905357..4905416 -50:+10 GAGAAGTTCGCCGGCGTCGCCCGCTGACGGCCCCCCTATGCTGGACCCGCCCGCAGGGGC Sawai R, et al. (2004): S1
afsL None Promoter 4790587..4790644 -50:+10 TGCCCCCTCCGGCGCCCGGTGACGGCCGCACCGCATAGGCTGCGTACCTGGTCAGCTC Sawai R, et al. (2004): S1
metK None Promoter 1579073..1579132 -50:+10 AGCGTGGCGCCCCTGGCCAAGGACGCTTCCTTCTGGGCAGAATGCCCGTGCCGCAGGTCA Okamoto S, et al. (2003): PE



DBSCR:

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